
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:50 04/04/2011

Input data from file "591-tomodel-phylip/chr7_11760.phylip" (7 taxa, 692 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYG	16	-2085.3257	4203.4573	0.5763	0.5763
HKYIG	17	-2085.3202	4205.5484	0.2026	0.7788
HKYI	16	-2086.3751	4205.5560	0.2018	0.9806
GTRG	20	-2085.0283	4211.3084	0.0114	0.9920
GTRI	20	-2086.0494	4213.3508	0.0041	0.9961
GTRIG	21	-2085.0233	4213.4257	0.0039	1.0000
HKY	15	-2100.6349	4231.9799	0.0000	1.0000
GTR	19	-2100.2054	4239.5418	0.0000	1.0000
K2PG	13	-2134.5243	4295.5854	0.0000	1.0000
SYMG	17	-2131.3144	4297.5368	0.0000	1.0000
K2PIG	14	-2134.5117	4297.6439	0.0000	1.0000
K2PI	13	-2135.9749	4298.4867	0.0000	1.0000
SYMIG	18	-2131.2907	4299.5977	0.0000	1.0000
SYMI	17	-2133.0931	4301.0941	0.0000	1.0000
F81G	15	-2139.3895	4309.4891	0.0000	1.0000
F81IG	16	-2139.3916	4311.5892	0.0000	1.0000
F81I	15	-2140.4824	4311.6749	0.0000	1.0000
K2P	12	-2149.9149	4324.2894	0.0000	1.0000
SYM	16	-2147.1395	4327.0849	0.0000	1.0000
F81	14	-2152.6856	4333.9916	0.0000	1.0000
JC69G	12	-2181.0661	4386.5916	0.0000	1.0000
JC69IG	13	-2181.0642	4388.6653	0.0000	1.0000
JC69I	12	-2182.3920	4389.2435	0.0000	1.0000
JC69	11	-2194.6983	4411.7849	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-2085.3257	4202.6514	0.5673	0.5673
HKYIG	17	-2085.3202	4204.6403	0.2099	0.7772
HKYI	16	-2086.3751	4204.7501	0.1986	0.9758
GTRG	20	-2085.0283	4210.0565	0.0140	0.9898
GTRIG	21	-2085.0233	4212.0466	0.0052	0.9950
GTRI	20	-2086.0494	4212.0989	0.0050	1.0000
HKY	15	-2100.6349	4231.2698	0.0000	1.0000
GTR	19	-2100.2054	4238.4108	0.0000	1.0000
K2PG	13	-2134.5243	4295.0486	0.0000	1.0000
SYMG	17	-2131.3144	4296.6288	0.0000	1.0000
K2PIG	14	-2134.5117	4297.0235	0.0000	1.0000
K2PI	13	-2135.9749	4297.9498	0.0000	1.0000
SYMIG	18	-2131.2907	4298.5814	0.0000	1.0000
SYMI	17	-2133.0931	4300.1861	0.0000	1.0000
F81G	15	-2139.3895	4308.7790	0.0000	1.0000
F81IG	16	-2139.3916	4310.7833	0.0000	1.0000
F81I	15	-2140.4824	4310.9648	0.0000	1.0000
K2P	12	-2149.9149	4323.8299	0.0000	1.0000
SYM	16	-2147.1395	4326.2790	0.0000	1.0000
F81	14	-2152.6856	4333.3712	0.0000	1.0000
JC69G	12	-2181.0661	4386.1321	0.0000	1.0000
JC69IG	13	-2181.0642	4388.1284	0.0000	1.0000
JC69I	12	-2182.3920	4388.7840	0.0000	1.0000
JC69	11	-2194.6983	4411.3966	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2085.3257	4275.2847	0.7203	0.7203
HKYI	16	-2086.3751	4277.3835	0.2522	0.9725
HKYIG	17	-2085.3202	4281.8133	0.0275	1.0000
HKY	15	-2100.6349	4299.3636	0.0000	1.0000
GTRG	20	-2085.0283	4300.8483	0.0000	1.0000
GTRI	20	-2086.0494	4302.8906	0.0000	1.0000
GTRIG	21	-2085.0233	4307.3779	0.0000	1.0000
GTR	19	-2100.2054	4324.6629	0.0000	1.0000
K2PG	13	-2134.5243	4354.0632	0.0000	1.0000
K2PI	13	-2135.9749	4356.9644	0.0000	1.0000
K2PIG	14	-2134.5117	4360.5777	0.0000	1.0000
SYMG	17	-2131.3144	4373.8017	0.0000	1.0000
F81G	15	-2139.3895	4376.8728	0.0000	1.0000
SYMI	17	-2133.0931	4377.3591	0.0000	1.0000
K2P	12	-2149.9149	4378.3049	0.0000	1.0000
F81I	15	-2140.4824	4379.0586	0.0000	1.0000
SYMIG	18	-2131.2907	4380.2939	0.0000	1.0000
F81IG	16	-2139.3916	4383.4167	0.0000	1.0000
F81	14	-2152.6856	4396.9254	0.0000	1.0000
SYM	16	-2147.1395	4398.9123	0.0000	1.0000
JC69G	12	-2181.0661	4440.6072	0.0000	1.0000
JC69I	12	-2182.3920	4443.2590	0.0000	1.0000
JC69IG	13	-2181.0642	4447.1430	0.0000	1.0000
JC69	11	-2194.6983	4461.3321	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_11760.phylip = 1 - 692;
 Partition Dummy = 1:591-tomodel-phylip/chr7_11760.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_11760.phylip = 1 - 692;
 Partition Dummy = 1:591-tomodel-phylip/chr7_11760.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_11760.phylip = 1 - 692;
 Partition Dummy = 1:591-tomodel-phylip/chr7_11760.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

