
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:49 04/04/2011

Input data from file "591-tomodel-phylip/chr7_11606.phylip" (7 taxa, 868 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: HKYI


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-3205.8002	6451.6004	0.4695	0.4695
GTRG	20	-3206.2479	6452.4958	0.3000	0.7695
GTRIG	21	-3205.7270	6453.4540	0.1858	0.9554
HKYI	16	-3212.8595	6457.7190	0.0220	0.9774
HKYG	16	-3213.3112	6458.6223	0.0140	0.9914
HKYIG	17	-3212.8017	6459.6035	0.0086	1.0000
GTR	19	-3224.9731	6487.9462	0.0000	1.0000
HKY	15	-3233.0053	6496.0105	0.0000	1.0000
K2PI	13	-3254.9067	6535.8133	0.0000	1.0000
K2PG	13	-3255.6104	6537.2209	0.0000	1.0000
K2PIG	14	-3254.8923	6537.7846	0.0000	1.0000
SYMI	17	-3252.5257	6539.0514	0.0000	1.0000
SYMG	17	-3252.9633	6539.9266	0.0000	1.0000
SYMIG	18	-3252.4612	6540.9224	0.0000	1.0000
K2P	12	-3276.4238	6576.8476	0.0000	1.0000
SYM	16	-3273.4804	6578.9608	0.0000	1.0000
F81I	15	-3350.0841	6730.1682	0.0000	1.0000
F81IG	16	-3350.0986	6732.1971	0.0000	1.0000
F81G	15	-3351.3273	6732.6545	0.0000	1.0000
F81	14	-3366.7900	6761.5800	0.0000	1.0000
JC69I	12	-3381.3758	6786.7515	0.0000	1.0000
JC69IG	13	-3381.3903	6788.7806	0.0000	1.0000
JC69G	12	-3382.6600	6789.3199	0.0000	1.0000
JC69	11	-3399.0742	6820.1484	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-3212.8595	6533.9781	0.5970	0.5970
HKYG	16	-3213.3112	6534.8814	0.3800	0.9770
HKYIG	17	-3212.8017	6540.6287	0.0215	0.9985
GTRI	20	-3205.8002	6546.9243	0.0009	0.9994
GTRG	20	-3206.2479	6547.8196	0.0006	1.0000
GTRIG	21	-3205.7270	6553.5440	0.0000	1.0000
HKY	15	-3233.0053	6567.5034	0.0000	1.0000
GTR	19	-3224.9731	6578.5038	0.0000	1.0000
K2PI	13	-3254.9067	6597.7738	0.0000	1.0000
K2PG	13	-3255.6104	6599.1814	0.0000	1.0000
K2PIG	14	-3254.8923	6604.5113	0.0000	1.0000
SYMI	17	-3252.5257	6620.0767	0.0000	1.0000
SYMG	17	-3252.9633	6620.9519	0.0000	1.0000
SYMIG	18	-3252.4612	6626.7139	0.0000	1.0000
K2P	12	-3276.4238	6634.0419	0.0000	1.0000
SYM	16	-3273.4804	6655.2198	0.0000	1.0000
F81I	15	-3350.0841	6801.6611	0.0000	1.0000
F81G	15	-3351.3273	6804.1474	0.0000	1.0000
F81IG	16	-3350.0986	6808.4562	0.0000	1.0000
F81	14	-3366.7900	6828.3067	0.0000	1.0000
JC69I	12	-3381.3758	6843.9458	0.0000	1.0000
JC69G	12	-3382.6600	6846.5142	0.0000	1.0000
JC69IG	13	-3381.3903	6850.7411	0.0000	1.0000
JC69	11	-3399.0742	6872.5765	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_11606.phylip = 1 - 868;
 Partition Dummy = 1:591-tomodel-phylip/chr7_11606.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_11606.phylip = 1 - 868;
 Partition Dummy = 1:591-tomodel-phylip/chr7_11606.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_11606.phylip = 1 - 868;
 Partition Dummy = 1:591-tomodel-phylip/chr7_11606.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

