
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:48 04/04/2011

Input data from file "591-tomodel-phylip/chr7_11485.phylip" (7 taxa, 1171 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-4298.8120	8637.6240	0.6702	0.6702
GTRIG	21	-4298.8183	8639.6365	0.2450	0.9153
GTRI	20	-4300.8804	8641.7609	0.0847	1.0000
HKYG	16	-4312.8212	8657.6424	0.0000	1.0000
HKYIG	17	-4312.8211	8659.6423	0.0000	1.0000
HKYI	16	-4315.1743	8662.3486	0.0000	1.0000
GTR	19	-4323.8180	8685.6359	0.0000	1.0000
HKY	15	-4336.8270	8703.6539	0.0000	1.0000
K2PG	13	-4380.1942	8786.3885	0.0000	1.0000
SYMG	17	-4376.2217	8786.4435	0.0000	1.0000
K2PIG	14	-4380.1942	8788.3884	0.0000	1.0000
SYMIG	18	-4376.2312	8788.4623	0.0000	1.0000
SYMI	17	-4377.8029	8789.6058	0.0000	1.0000
K2PI	13	-4382.3617	8790.7234	0.0000	1.0000
SYM	16	-4401.4905	8834.9810	0.0000	1.0000
K2P	12	-4405.6408	8835.2816	0.0000	1.0000
F81G	15	-4424.0038	8878.0075	0.0000	1.0000
F81IG	16	-4424.0039	8880.0077	0.0000	1.0000
F81I	15	-4425.7557	8881.5115	0.0000	1.0000
F81	14	-4447.4059	8922.8117	0.0000	1.0000
JC69G	12	-4476.1888	8976.3776	0.0000	1.0000
JC69IG	13	-4476.1888	8978.3777	0.0000	1.0000
JC69I	12	-4477.9993	8979.9986	0.0000	1.0000
JC69	11	-4500.4057	9022.8114	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-4312.8212	8738.6922	0.4658	0.4658
GTRG	20	-4298.8120	8738.9363	0.4123	0.8780
GTRI	20	-4300.8804	8743.0732	0.0521	0.9301
HKYI	16	-4315.1743	8743.3984	0.0443	0.9744
HKYIG	17	-4312.8211	8745.7577	0.0136	0.9880
GTRIG	21	-4298.8183	8746.0144	0.0120	1.0000
HKY	15	-4336.8270	8779.6381	0.0000	1.0000
GTR	19	-4323.8180	8781.8826	0.0000	1.0000
K2PG	13	-4380.1942	8852.2415	0.0000	1.0000
K2PI	13	-4382.3617	8856.5764	0.0000	1.0000
K2PIG	14	-4380.1942	8859.3070	0.0000	1.0000
SYMG	17	-4376.2217	8872.5589	0.0000	1.0000
SYMI	17	-4377.8029	8875.7212	0.0000	1.0000
SYMIG	18	-4376.2312	8879.6434	0.0000	1.0000
K2P	12	-4405.6408	8896.0690	0.0000	1.0000
SYM	16	-4401.4905	8916.0308	0.0000	1.0000
F81G	15	-4424.0038	8953.9917	0.0000	1.0000
F81I	15	-4425.7557	8957.4957	0.0000	1.0000
F81IG	16	-4424.0039	8961.0575	0.0000	1.0000
F81	14	-4447.4059	8993.7303	0.0000	1.0000
JC69G	12	-4476.1888	9037.1650	0.0000	1.0000
JC69I	12	-4477.9993	9040.7860	0.0000	1.0000
JC69IG	13	-4476.1888	9044.2307	0.0000	1.0000
JC69	11	-4500.4057	9078.5331	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_11485.phylip = 1 - 1171;
 Partition Dummy = 1:591-tomodel-phylip/chr7_11485.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_11485.phylip = 1 - 1171;
 Partition Dummy = 1:591-tomodel-phylip/chr7_11485.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_11485.phylip = 1 - 1171;
 Partition Dummy = 1:591-tomodel-phylip/chr7_11485.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

