
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:47 04/04/2011

Input data from file "591-tomodel-phylip/chr7_10860.phylip" (7 taxa, 758 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1893.1470	3827.4337	0.4577	0.4577
GTRI	20	-1893.3494	3827.8385	0.3738	0.8315
GTRIG	21	-1893.1545	3829.5644	0.1577	0.9892
HKYG	16	-1901.8608	3836.4558	0.0050	0.9942
HKYI	16	-1902.2106	3837.1554	0.0035	0.9978
HKYIG	17	-1901.8499	3838.5268	0.0018	0.9996
GTR	19	-1901.1389	3841.3075	0.0004	1.0000
HKY	15	-1910.9249	3852.4966	0.0000	1.0000
K2PG	13	-1936.2318	3898.9528	0.0000	1.0000
K2PI	13	-1936.5560	3899.6013	0.0000	1.0000
K2PIG	14	-1936.2021	3900.9695	0.0000	1.0000
SYMG	17	-1934.0147	3902.8564	0.0000	1.0000
SYMI	17	-1934.2300	3903.2870	0.0000	1.0000
SYMIG	18	-1934.0114	3904.9484	0.0000	1.0000
F81G	15	-1940.2589	3911.1647	0.0000	1.0000
F81I	15	-1940.5044	3911.6558	0.0000	1.0000
F81IG	16	-1940.2560	3913.2462	0.0000	1.0000
K2P	12	-1947.1251	3918.6690	0.0000	1.0000
SYM	16	-1943.9110	3920.5562	0.0000	1.0000
F81	14	-1949.0196	3926.6045	0.0000	1.0000
JC69G	12	-1971.5205	3967.4599	0.0000	1.0000
JC69I	12	-1971.7945	3968.0077	0.0000	1.0000
JC69IG	13	-1971.5059	3969.5011	0.0000	1.0000
JC69	11	-1981.3748	3985.1035	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1893.1470	3826.2939	0.4542	0.4542
GTRI	20	-1893.3494	3826.6988	0.3710	0.8253
GTRIG	21	-1893.1545	3828.3089	0.1659	0.9911
HKYG	16	-1901.8608	3835.7217	0.0041	0.9952
HKYI	16	-1902.2106	3836.4213	0.0029	0.9981
HKYIG	17	-1901.8499	3837.6997	0.0015	0.9996
GTR	19	-1901.1389	3840.2777	0.0004	1.0000
HKY	15	-1910.9249	3851.8497	0.0000	1.0000
K2PG	13	-1936.2318	3898.4636	0.0000	1.0000
K2PI	13	-1936.5560	3899.1120	0.0000	1.0000
K2PIG	14	-1936.2021	3900.4043	0.0000	1.0000
SYMG	17	-1934.0147	3902.0294	0.0000	1.0000
SYMI	17	-1934.2300	3902.4600	0.0000	1.0000
SYMIG	18	-1934.0114	3904.0228	0.0000	1.0000
F81G	15	-1940.2589	3910.5178	0.0000	1.0000
F81I	15	-1940.5044	3911.0089	0.0000	1.0000
F81IG	16	-1940.2560	3912.5120	0.0000	1.0000
K2P	12	-1947.1251	3918.2502	0.0000	1.0000
SYM	16	-1943.9110	3919.8220	0.0000	1.0000
F81	14	-1949.0196	3926.0393	0.0000	1.0000
JC69G	12	-1971.5205	3967.0411	0.0000	1.0000
JC69I	12	-1971.7945	3967.5889	0.0000	1.0000
JC69IG	13	-1971.5059	3969.0118	0.0000	1.0000
JC69	11	-1981.3748	3984.7496	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1901.8608	3909.8126	0.5667	0.5667
HKYI	16	-1902.2106	3910.5122	0.3995	0.9662
HKYIG	17	-1901.8499	3916.4214	0.0208	0.9870
GTRG	20	-1893.1470	3918.9076	0.0060	0.9930
GTRI	20	-1893.3494	3919.3124	0.0049	0.9979
HKY	15	-1910.9249	3921.3100	0.0018	0.9997
GTRIG	21	-1893.1545	3925.5533	0.0002	0.9999
GTR	19	-1901.1389	3928.2607	0.0001	1.0000
K2PG	13	-1936.2318	3958.6625	0.0000	1.0000
K2PI	13	-1936.5560	3959.3109	0.0000	1.0000
K2PIG	14	-1936.2021	3965.2338	0.0000	1.0000
K2P	12	-1947.1251	3973.8184	0.0000	1.0000
F81G	15	-1940.2589	3979.9780	0.0000	1.0000
F81I	15	-1940.5044	3980.4691	0.0000	1.0000
SYMG	17	-1934.0147	3980.7510	0.0000	1.0000
SYMI	17	-1934.2300	3981.1816	0.0000	1.0000
F81IG	16	-1940.2560	3986.6030	0.0000	1.0000
SYMIG	18	-1934.0114	3987.3751	0.0000	1.0000
F81	14	-1949.0196	3990.8688	0.0000	1.0000
SYM	16	-1943.9110	3993.9130	0.0000	1.0000
JC69G	12	-1971.5205	4022.6093	0.0000	1.0000
JC69I	12	-1971.7945	4023.1571	0.0000	1.0000
JC69IG	13	-1971.5059	4029.2107	0.0000	1.0000
JC69	11	-1981.3748	4035.6871	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_10860.phylip = 1 - 758;
 Partition Dummy = 1:591-tomodel-phylip/chr7_10860.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_10860.phylip = 1 - 758;
 Partition Dummy = 1:591-tomodel-phylip/chr7_10860.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_10860.phylip = 1 - 758;
 Partition Dummy = 1:591-tomodel-phylip/chr7_10860.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

