
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:48 04/04/2011

Input data from file "591-tomodel-phylip/chr7_10618.phylip" (7 taxa, 992 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-2808.3205	5648.6409	0.2874	0.2874
GTRG	20	-2804.6247	5649.2493	0.2120	0.4994
HKYI	16	-2808.8301	5649.6603	0.1726	0.6720
HKYIG	17	-2808.1701	5650.3402	0.1229	0.7948
GTRI	20	-2805.2508	5650.5016	0.1133	0.9082
GTRIG	21	-2804.4614	5650.9228	0.0918	1.0000
HKY	15	-2850.6399	5731.2797	0.0000	1.0000
GTR	19	-2846.9967	5731.9935	0.0000	1.0000
F81G	15	-2881.4427	5792.8854	0.0000	1.0000
F81I	15	-2882.3345	5794.6691	0.0000	1.0000
F81IG	16	-2881.3569	5794.7138	0.0000	1.0000
K2PG	13	-2896.2413	5818.4826	0.0000	1.0000
SYMG	17	-2892.5631	5819.1262	0.0000	1.0000
K2PI	13	-2896.7840	5819.5679	0.0000	1.0000
K2PIG	14	-2896.0261	5820.0522	0.0000	1.0000
SYMI	17	-2893.2327	5820.4654	0.0000	1.0000
SYMIG	18	-2892.4095	5820.8191	0.0000	1.0000
F81	14	-2921.4786	5870.9573	0.0000	1.0000
K2P	12	-2940.5255	5905.0511	0.0000	1.0000
SYM	16	-2937.3744	5906.7488	0.0000	1.0000
JC69G	12	-2956.6982	5937.3965	0.0000	1.0000
JC69IG	13	-2956.5754	5939.1508	0.0000	1.0000
JC69I	12	-2957.7631	5939.5262	0.0000	1.0000
JC69	11	-2997.7418	6017.4836	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2808.3205	5727.0365	0.6106	0.6106
HKYI	16	-2808.8301	5728.0558	0.3668	0.9774
HKYIG	17	-2808.1701	5733.6355	0.0225	1.0000
GTRG	20	-2804.6247	5747.2438	0.0000	1.0000
GTRI	20	-2805.2508	5748.4961	0.0000	1.0000
GTRIG	21	-2804.4614	5753.8170	0.0000	1.0000
HKY	15	-2850.6399	5804.7756	0.0000	1.0000
GTR	19	-2846.9967	5825.0882	0.0000	1.0000
F81G	15	-2881.4427	5866.3812	0.0000	1.0000
F81I	15	-2882.3345	5868.1649	0.0000	1.0000
F81IG	16	-2881.3569	5873.1094	0.0000	1.0000
K2PG	13	-2896.2413	5882.1790	0.0000	1.0000
K2PI	13	-2896.7840	5883.2643	0.0000	1.0000
K2PIG	14	-2896.0261	5888.6483	0.0000	1.0000
SYMG	17	-2892.5631	5902.4215	0.0000	1.0000
SYMI	17	-2893.2327	5903.7607	0.0000	1.0000
SYMIG	18	-2892.4095	5909.0141	0.0000	1.0000
F81	14	-2921.4786	5939.5534	0.0000	1.0000
K2P	12	-2940.5255	5963.8478	0.0000	1.0000
SYM	16	-2937.3744	5985.1443	0.0000	1.0000
JC69G	12	-2956.6982	5996.1932	0.0000	1.0000
JC69I	12	-2957.7631	5998.3228	0.0000	1.0000
JC69IG	13	-2956.5754	6002.8472	0.0000	1.0000
JC69	11	-2997.7418	6071.3806	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_10618.phylip = 1 - 992;
 Partition Dummy = 1:591-tomodel-phylip/chr7_10618.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_10618.phylip = 1 - 992;
 Partition Dummy = 1:591-tomodel-phylip/chr7_10618.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_10618.phylip = 1 - 992;
 Partition Dummy = 1:591-tomodel-phylip/chr7_10618.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

