
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:46 04/04/2011

Input data from file "591-tomodel-phylip/chr7_10443.phylip" (7 taxa, 1119 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-4527.2897	9094.5794	0.7236	0.7236
GTRIG	21	-4527.2930	9096.5859	0.2653	0.9889
GTRI	20	-4531.5182	9103.0364	0.0105	0.9995
HKYG	16	-4538.8715	9109.7429	0.0004	0.9998
HKYIG	17	-4538.8452	9111.6904	0.0001	1.0000
HKYI	16	-4541.2892	9114.5784	0.0000	1.0000
GTR	19	-4569.5169	9177.0337	0.0000	1.0000
HKY	15	-4579.8607	9189.7213	0.0000	1.0000
K2PG	13	-4586.0356	9198.0712	0.0000	1.0000
K2PIG	14	-4586.0388	9200.0775	0.0000	1.0000
SYMG	17	-4583.9732	9201.9464	0.0000	1.0000
K2PI	13	-4588.3266	9202.6532	0.0000	1.0000
SYMIG	18	-4583.9886	9203.9771	0.0000	1.0000
SYMI	17	-4586.3844	9206.7688	0.0000	1.0000
K2P	12	-4627.7716	9279.5433	0.0000	1.0000
SYM	16	-4625.9350	9283.8700	0.0000	1.0000
F81G	15	-4627.4478	9284.8955	0.0000	1.0000
F81I	15	-4627.5624	9285.1249	0.0000	1.0000
F81IG	16	-4626.9564	9285.9129	0.0000	1.0000
JC69G	12	-4662.5481	9349.0962	0.0000	1.0000
JC69I	12	-4662.9370	9349.8740	0.0000	1.0000
JC69IG	13	-4662.1884	9350.3769	0.0000	1.0000
F81	14	-4661.6224	9351.2449	0.0000	1.0000
JC69	11	-4698.1931	9418.3863	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-4538.8715	9190.0660	0.8270	0.8270
HKYI	16	-4541.2892	9194.9015	0.0737	0.9007
GTRG	20	-4527.2897	9194.9833	0.0708	0.9715
HKYIG	17	-4538.8452	9197.0337	0.0254	0.9969
GTRIG	21	-4527.2930	9202.0099	0.0021	0.9990
GTRI	20	-4531.5182	9203.4402	0.0010	1.0000
K2PG	13	-4586.0356	9263.3337	0.0000	1.0000
HKY	15	-4579.8607	9265.0242	0.0000	1.0000
K2PI	13	-4588.3266	9267.9157	0.0000	1.0000
K2PIG	14	-4586.0388	9270.3602	0.0000	1.0000
GTR	19	-4569.5169	9272.4174	0.0000	1.0000
SYMG	17	-4583.9732	9287.2896	0.0000	1.0000
SYMI	17	-4586.3844	9292.1121	0.0000	1.0000
SYMIG	18	-4583.9886	9294.3406	0.0000	1.0000
K2P	12	-4627.7716	9339.7856	0.0000	1.0000
F81G	15	-4627.4478	9360.1984	0.0000	1.0000
F81I	15	-4627.5624	9360.4277	0.0000	1.0000
SYM	16	-4625.9350	9364.1930	0.0000	1.0000
F81IG	16	-4626.9564	9366.2359	0.0000	1.0000
JC69G	12	-4662.5481	9409.3385	0.0000	1.0000
JC69I	12	-4662.9370	9410.1163	0.0000	1.0000
JC69IG	13	-4662.1884	9415.6394	0.0000	1.0000
F81	14	-4661.6224	9421.5275	0.0000	1.0000
JC69	11	-4698.1931	9473.6084	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_10443.phylip = 1 - 1119;
 Partition Dummy = 1:591-tomodel-phylip/chr7_10443.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_10443.phylip = 1 - 1119;
 Partition Dummy = 1:591-tomodel-phylip/chr7_10443.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_10443.phylip = 1 - 1119;
 Partition Dummy = 1:591-tomodel-phylip/chr7_10443.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

