
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:45 04/04/2011

Input data from file "591-tomodel-phylip/chr7_10394.phylip" (7 taxa, 647 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYG	16	-1827.0367	3686.9369	0.5111	0.5111
HKYI	16	-1827.7045	3688.2725	0.2621	0.7732
HKYIG	17	-1826.9672	3688.9073	0.1908	0.9640
GTRG	20	-1826.0854	3693.5127	0.0191	0.9831
GTRI	20	-1826.7184	3694.7786	0.0101	0.9932
GTRIG	21	-1826.0527	3695.5838	0.0068	1.0000
F81G	15	-1861.4623	3753.6854	0.0000	1.0000
F81I	15	-1861.6068	3753.9744	0.0000	1.0000
F81IG	16	-1861.4123	3755.6881	0.0000	1.0000
HKY	15	-1874.0892	3778.9392	0.0000	1.0000
SYMG	17	-1872.2410	3779.4550	0.0000	1.0000
SYMI	17	-1872.9218	3780.8165	0.0000	1.0000
SYMIG	18	-1872.1524	3781.3940	0.0000	1.0000
K2PG	13	-1879.1375	3784.8500	0.0000	1.0000
GTR	19	-1873.2111	3785.6344	0.0000	1.0000
K2PI	13	-1879.7803	3786.1357	0.0000	1.0000
K2PIG	14	-1879.0121	3786.6887	0.0000	1.0000
F81	14	-1903.1493	3834.9632	0.0000	1.0000
JC69G	12	-1905.5745	3835.6411	0.0000	1.0000
JC69I	12	-1905.7686	3836.0293	0.0000	1.0000
JC69IG	13	-1905.4447	3837.4645	0.0000	1.0000
SYM	16	-1917.7060	3868.2755	0.0000	1.0000
K2P	12	-1923.6861	3871.8642	0.0000	1.0000
JC69	11	-1946.6083	3915.6324	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-1827.0367	3686.0734	0.5005	0.5005
HKYI	16	-1827.7045	3687.4090	0.2567	0.7572
HKYIG	17	-1826.9672	3687.9343	0.1974	0.9546
GTRG	20	-1826.0854	3692.1709	0.0237	0.9784
GTRI	20	-1826.7184	3693.4367	0.0126	0.9910
GTRIG	21	-1826.0527	3694.1054	0.0090	1.0000
F81G	15	-1861.4623	3752.9247	0.0000	1.0000
F81I	15	-1861.6068	3753.2137	0.0000	1.0000
F81IG	16	-1861.4123	3754.8246	0.0000	1.0000
HKY	15	-1874.0892	3778.1785	0.0000	1.0000
SYMG	17	-1872.2410	3778.4820	0.0000	1.0000
SYMI	17	-1872.9218	3779.8436	0.0000	1.0000
SYMIG	18	-1872.1524	3780.3049	0.0000	1.0000
K2PG	13	-1879.1375	3784.2750	0.0000	1.0000
GTR	19	-1873.2111	3784.4223	0.0000	1.0000
K2PI	13	-1879.7803	3785.5607	0.0000	1.0000
K2PIG	14	-1879.0121	3786.0242	0.0000	1.0000
F81	14	-1903.1493	3834.2986	0.0000	1.0000
JC69G	12	-1905.5745	3835.1490	0.0000	1.0000
JC69I	12	-1905.7686	3835.5372	0.0000	1.0000
JC69IG	13	-1905.4447	3836.8895	0.0000	1.0000
SYM	16	-1917.7060	3867.4120	0.0000	1.0000
K2P	12	-1923.6861	3871.3721	0.0000	1.0000
JC69	11	-1946.6083	3915.2166	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1827.0367	3757.6309	0.6431	0.6431
HKYI	16	-1827.7045	3758.9665	0.3298	0.9729
HKYIG	17	-1826.9672	3763.9642	0.0271	1.0000
GTRG	20	-1826.0854	3781.6178	0.0000	1.0000
GTRI	20	-1826.7184	3782.8836	0.0000	1.0000
GTRIG	21	-1826.0527	3788.0247	0.0000	1.0000
F81G	15	-1861.4623	3820.0099	0.0000	1.0000
F81I	15	-1861.6068	3820.2989	0.0000	1.0000
F81IG	16	-1861.4123	3826.3822	0.0000	1.0000
K2PG	13	-1879.1375	3842.4155	0.0000	1.0000
K2PI	13	-1879.7803	3843.7012	0.0000	1.0000
HKY	15	-1874.0892	3845.2637	0.0000	1.0000
K2PIG	14	-1879.0121	3848.6370	0.0000	1.0000
SYMG	17	-1872.2410	3854.5119	0.0000	1.0000
SYMI	17	-1872.9218	3855.8734	0.0000	1.0000
SYMIG	18	-1872.1524	3860.8071	0.0000	1.0000
GTR	19	-1873.2111	3869.3969	0.0000	1.0000
JC69G	12	-1905.5745	3888.8172	0.0000	1.0000
JC69I	12	-1905.7686	3889.2053	0.0000	1.0000
JC69IG	13	-1905.4447	3895.0300	0.0000	1.0000
F81	14	-1903.1493	3896.9115	0.0000	1.0000
K2P	12	-1923.6861	3925.0403	0.0000	1.0000
SYM	16	-1917.7060	3938.9696	0.0000	1.0000
JC69	11	-1946.6083	3964.4124	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_10394.phylip = 1 - 647;
 Partition Dummy = 1:591-tomodel-phylip/chr7_10394.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_10394.phylip = 1 - 647;
 Partition Dummy = 1:591-tomodel-phylip/chr7_10394.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr7_10394.phylip = 1 - 647;
 Partition Dummy = 1:591-tomodel-phylip/chr7_10394.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

