
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:48 04/04/2011

Input data from file "591-tomodel-phylip/chr6_9631.phylip" (7 taxa, 866 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2268.4136	4576.8271	0.5563	0.5563
GTRIG	21	-2268.1878	4578.3757	0.2565	0.8127
GTRI	20	-2269.5028	4579.0056	0.1872	0.9999
HKYG	16	-2281.7182	4595.4364	0.0001	1.0000
HKYIG	17	-2281.4646	4596.9291	0.0000	1.0000
HKYI	16	-2282.9337	4597.8675	0.0000	1.0000
GTR	19	-2293.7262	4625.4523	0.0000	1.0000
SYMG	17	-2297.6606	4629.3211	0.0000	1.0000
SYMIG	18	-2297.4105	4630.8210	0.0000	1.0000
SYMI	17	-2298.8650	4631.7300	0.0000	1.0000
K2PG	13	-2303.5912	4633.1823	0.0000	1.0000
K2PIG	14	-2303.2893	4634.5786	0.0000	1.0000
K2PI	13	-2305.0141	4636.0282	0.0000	1.0000
HKY	15	-2303.9273	4637.8547	0.0000	1.0000
F81G	15	-2316.3949	4662.7898	0.0000	1.0000
F81IG	16	-2316.1914	4664.3828	0.0000	1.0000
F81I	15	-2317.5671	4665.1342	0.0000	1.0000
SYM	16	-2319.8536	4671.7072	0.0000	1.0000
K2P	12	-2325.0312	4674.0624	0.0000	1.0000
JC69G	12	-2335.0125	4694.0250	0.0000	1.0000
JC69IG	13	-2334.7730	4695.5461	0.0000	1.0000
JC69I	12	-2336.3326	4696.6653	0.0000	1.0000
F81	14	-2337.0849	4702.1698	0.0000	1.0000
JC69	11	-2355.5058	4733.0116	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2281.7182	4671.6586	0.4092	0.4092
GTRG	20	-2268.4136	4672.1048	0.3274	0.7366
HKYI	16	-2282.9337	4674.0896	0.1214	0.8580
GTRI	20	-2269.5028	4674.2833	0.1102	0.9681
HKYIG	17	-2281.4646	4677.9152	0.0179	0.9861
GTRIG	21	-2268.1878	4678.4172	0.0139	1.0000
K2PG	13	-2303.5912	4695.1128	0.0000	1.0000
K2PI	13	-2305.0141	4697.9587	0.0000	1.0000
K2PIG	14	-2303.2893	4701.2730	0.0000	1.0000
HKY	15	-2303.9273	4709.3129	0.0000	1.0000
SYMG	17	-2297.6606	4710.3071	0.0000	1.0000
SYMI	17	-2298.8650	4712.7161	0.0000	1.0000
GTR	19	-2293.7262	4715.9662	0.0000	1.0000
SYMIG	18	-2297.4105	4716.5709	0.0000	1.0000
K2P	12	-2325.0312	4731.2291	0.0000	1.0000
F81G	15	-2316.3949	4734.2481	0.0000	1.0000
F81I	15	-2317.5671	4736.5924	0.0000	1.0000
F81IG	16	-2316.1914	4740.6050	0.0000	1.0000
SYM	16	-2319.8536	4747.9293	0.0000	1.0000
JC69G	12	-2335.0125	4751.1916	0.0000	1.0000
JC69I	12	-2336.3326	4753.8319	0.0000	1.0000
JC69IG	13	-2334.7730	4757.4766	0.0000	1.0000
F81	14	-2337.0849	4768.8641	0.0000	1.0000
JC69	11	-2355.5058	4785.4144	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_9631.phylip = 1 - 866;
 Partition Dummy = 1:591-tomodel-phylip/chr6_9631.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_9631.phylip = 1 - 866;
 Partition Dummy = 1:591-tomodel-phylip/chr6_9631.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_9631.phylip = 1 - 866;
 Partition Dummy = 1:591-tomodel-phylip/chr6_9631.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

