
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:47 04/04/2011

Input data from file "591-tomodel-phylip/chr6_8806.phylip" (7 taxa, 891 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYI


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3085.7747	6211.5493	0.5452	0.5452
GTRIG	21	-3085.6363	6213.2725	0.2303	0.7756
GTRI	20	-3086.6630	6213.3260	0.2243	0.9998
HKYI	16	-3098.4541	6228.9082	0.0001	0.9999
HKYG	16	-3099.1153	6230.2306	0.0000	1.0000
HKYIG	17	-3098.2483	6230.4966	0.0000	1.0000
SYMI	17	-3105.8483	6245.6966	0.0000	1.0000
SYMG	17	-3106.6583	6247.3167	0.0000	1.0000
SYMIG	18	-3105.6713	6247.3427	0.0000	1.0000
K2PI	13	-3113.3106	6252.6211	0.0000	1.0000
K2PG	13	-3114.1166	6254.2332	0.0000	1.0000
K2PIG	14	-3113.1611	6254.3223	0.0000	1.0000
GTR	19	-3142.0729	6322.1457	0.0000	1.0000
HKY	15	-3155.6462	6341.2923	0.0000	1.0000
SYM	16	-3162.2317	6356.4635	0.0000	1.0000
F81I	15	-3164.3023	6358.6045	0.0000	1.0000
F81G	15	-3164.6066	6359.2133	0.0000	1.0000
F81IG	16	-3164.0425	6360.0850	0.0000	1.0000
K2P	12	-3169.5200	6363.0400	0.0000	1.0000
JC69I	12	-3176.5734	6377.1467	0.0000	1.0000
JC69G	12	-3177.0478	6378.0957	0.0000	1.0000
JC69IG	13	-3176.3640	6378.7280	0.0000	1.0000
F81	14	-3212.6764	6453.3529	0.0000	1.0000
JC69	11	-3225.1091	6472.2181	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-3098.4541	6305.5858	0.4634	0.4634
HKYG	16	-3099.1153	6306.9081	0.2393	0.7027
GTRG	20	-3085.7747	6307.3962	0.1874	0.8901
GTRI	20	-3086.6630	6309.1729	0.0771	0.9672
HKYIG	17	-3098.2483	6311.9665	0.0191	0.9863
GTRIG	21	-3085.6363	6313.9117	0.0072	0.9935
K2PI	13	-3113.3106	6314.9216	0.0044	0.9979
K2PG	13	-3114.1166	6316.5337	0.0019	0.9998
K2PIG	14	-3113.1611	6321.4151	0.0002	1.0000
SYMI	17	-3105.8483	6327.1665	0.0000	1.0000
SYMG	17	-3106.6583	6328.7865	0.0000	1.0000
SYMIG	18	-3105.6713	6333.6049	0.0000	1.0000
HKY	15	-3155.6462	6413.1775	0.0000	1.0000
GTR	19	-3142.0729	6413.2003	0.0000	1.0000
K2P	12	-3169.5200	6420.5481	0.0000	1.0000
F81I	15	-3164.3023	6430.4897	0.0000	1.0000
F81G	15	-3164.6066	6431.0984	0.0000	1.0000
SYM	16	-3162.2317	6433.1410	0.0000	1.0000
JC69I	12	-3176.5734	6434.6549	0.0000	1.0000
JC69G	12	-3177.0478	6435.6038	0.0000	1.0000
F81IG	16	-3164.0425	6436.7625	0.0000	1.0000
JC69IG	13	-3176.3640	6441.0285	0.0000	1.0000
F81	14	-3212.6764	6520.4457	0.0000	1.0000
JC69	11	-3225.1091	6524.9339	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_8806.phylip = 1 - 891;
 Partition Dummy = 1:591-tomodel-phylip/chr6_8806.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_8806.phylip = 1 - 891;
 Partition Dummy = 1:591-tomodel-phylip/chr6_8806.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_8806.phylip = 1 - 891;
 Partition Dummy = 1:591-tomodel-phylip/chr6_8806.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

