
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:45 04/04/2011

Input data from file "591-tomodel-phylip/chr6_7862.phylip" (7 taxa, 923 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2367.5101	4775.0203	0.4376	0.4376
GTRI	20	-2367.9906	4775.9812	0.2706	0.7082
GTRIG	21	-2367.2201	4776.4403	0.2151	0.9233
HKYG	16	-2373.9922	4779.9844	0.0366	0.9599
HKYI	16	-2374.4594	4780.9189	0.0229	0.9828
HKYIG	17	-2373.7470	4781.4940	0.0172	1.0000
F81G	15	-2399.8859	4829.7718	0.0000	1.0000
F81I	15	-2400.3261	4830.6523	0.0000	1.0000
F81IG	16	-2399.7347	4831.4695	0.0000	1.0000
SYMG	17	-2402.4729	4838.9458	0.0000	1.0000
SYMIG	18	-2402.0458	4840.0916	0.0000	1.0000
SYMI	17	-2403.1227	4840.2454	0.0000	1.0000
GTR	19	-2402.4135	4842.8270	0.0000	1.0000
K2PG	13	-2408.4151	4842.8302	0.0000	1.0000
K2PI	13	-2409.0204	4844.0408	0.0000	1.0000
K2PIG	14	-2408.0662	4844.1324	0.0000	1.0000
HKY	15	-2408.8209	4847.6417	0.0000	1.0000
JC69G	12	-2430.0778	4884.1556	0.0000	1.0000
JC69I	12	-2430.6155	4885.2310	0.0000	1.0000
JC69IG	13	-2429.8545	4885.7090	0.0000	1.0000
F81	14	-2432.9362	4893.8723	0.0000	1.0000
SYM	16	-2435.8274	4903.6549	0.0000	1.0000
K2P	12	-2441.8262	4907.6524	0.0000	1.0000
JC69	11	-2462.7150	4947.4299	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2373.9922	4857.2264	0.5988	0.5988
HKYI	16	-2374.4594	4858.1609	0.3753	0.9741
HKYIG	17	-2373.7470	4863.5637	0.0252	0.9992
GTRG	20	-2367.5101	4871.5728	0.0005	0.9997
GTRI	20	-2367.9906	4872.5338	0.0003	1.0000
GTRIG	21	-2367.2201	4877.8205	0.0000	1.0000
F81G	15	-2399.8859	4902.1862	0.0000	1.0000
F81I	15	-2400.3261	4903.0667	0.0000	1.0000
K2PG	13	-2408.4151	4905.5894	0.0000	1.0000
K2PI	13	-2409.0204	4906.8000	0.0000	1.0000
F81IG	16	-2399.7347	4908.7115	0.0000	1.0000
K2PIG	14	-2408.0662	4911.7192	0.0000	1.0000
HKY	15	-2408.8209	4920.0562	0.0000	1.0000
SYMG	17	-2402.4729	4921.0155	0.0000	1.0000
SYMI	17	-2403.1227	4922.3151	0.0000	1.0000
SYMIG	18	-2402.0458	4926.9889	0.0000	1.0000
GTR	19	-2402.4135	4934.5519	0.0000	1.0000
JC69G	12	-2430.0778	4942.0871	0.0000	1.0000
JC69I	12	-2430.6155	4943.1626	0.0000	1.0000
JC69IG	13	-2429.8545	4948.4681	0.0000	1.0000
F81	14	-2432.9362	4961.4591	0.0000	1.0000
K2P	12	-2441.8262	4965.5839	0.0000	1.0000
SYM	16	-2435.8274	4980.8969	0.0000	1.0000
JC69	11	-2462.7150	5000.5338	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_7862.phylip = 1 - 923;
 Partition Dummy = 1:591-tomodel-phylip/chr6_7862.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_7862.phylip = 1 - 923;
 Partition Dummy = 1:591-tomodel-phylip/chr6_7862.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_7862.phylip = 1 - 923;
 Partition Dummy = 1:591-tomodel-phylip/chr6_7862.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

