
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:41 04/04/2011

Input data from file "591-tomodel-phylip/chr6_3284.phylip" (7 taxa, 767 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1947.8984	3936.9229	0.4660	0.4660
GTRI	20	-1948.1930	3937.5120	0.3471	0.8130
GTRIG	21	-1947.7586	3938.7574	0.1862	0.9993
HKYIG	17	-1957.8115	3950.4402	0.0005	0.9998
HKYG	16	-1960.2159	3953.1572	0.0001	0.9999
HKYI	16	-1960.9042	3954.5337	0.0001	1.0000
GTR	19	-1971.8523	3982.7219	0.0000	1.0000
HKY	15	-1983.9873	3998.6137	0.0000	1.0000
SYMI	17	-1983.6404	4002.0979	0.0000	1.0000
SYMG	17	-1984.1490	4003.1151	0.0000	1.0000
SYMIG	18	-1984.1490	4005.2125	0.0000	1.0000
K2PI	13	-1996.6455	4019.7745	0.0000	1.0000
K2PG	13	-1996.7314	4019.9462	0.0000	1.0000
K2PIG	14	-1996.7793	4022.1172	0.0000	1.0000
SYM	16	-2004.2730	4041.2713	0.0000	1.0000
K2P	12	-2017.0762	4058.5662	0.0000	1.0000
F81G	15	-2014.9730	4060.5850	0.0000	1.0000
F81I	15	-2015.1233	4060.8857	0.0000	1.0000
F81IG	16	-2014.9143	4062.5540	0.0000	1.0000
F81	14	-2033.7637	4096.0858	0.0000	1.0000
JC69I	12	-2046.0764	4116.5666	0.0000	1.0000
JC69G	12	-2046.4747	4117.3633	0.0000	1.0000
JC69IG	13	-2046.4748	4119.4329	0.0000	1.0000
JC69	11	-2063.6103	4149.5703	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1947.8984	3935.7969	0.4610	0.4610
GTRI	20	-1948.1930	3936.3860	0.3434	0.8043
GTRIG	21	-1947.7586	3937.5172	0.1950	0.9994
HKYIG	17	-1957.8115	3949.6231	0.0005	0.9998
HKYG	16	-1960.2159	3952.4318	0.0001	0.9999
HKYI	16	-1960.9042	3953.8083	0.0001	1.0000
GTR	19	-1971.8523	3981.7045	0.0000	1.0000
HKY	15	-1983.9873	3997.9745	0.0000	1.0000
SYMI	17	-1983.6404	4001.2808	0.0000	1.0000
SYMG	17	-1984.1490	4002.2981	0.0000	1.0000
SYMIG	18	-1984.1490	4004.2980	0.0000	1.0000
K2PI	13	-1996.6455	4019.2911	0.0000	1.0000
K2PG	13	-1996.7314	4019.4628	0.0000	1.0000
K2PIG	14	-1996.7793	4021.5587	0.0000	1.0000
SYM	16	-2004.2730	4040.5460	0.0000	1.0000
K2P	12	-2017.0762	4058.1524	0.0000	1.0000
F81G	15	-2014.9730	4059.9459	0.0000	1.0000
F81I	15	-2015.1233	4060.2466	0.0000	1.0000
F81IG	16	-2014.9143	4061.8287	0.0000	1.0000
F81	14	-2033.7637	4095.5273	0.0000	1.0000
JC69I	12	-2046.0764	4116.1528	0.0000	1.0000
JC69G	12	-2046.4747	4116.9495	0.0000	1.0000
JC69IG	13	-2046.4748	4118.9495	0.0000	1.0000
JC69	11	-2063.6103	4149.2207	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1960.2159	4026.7116	0.3874	0.3874
HKYI	16	-1960.9042	4028.0881	0.1947	0.5821
HKYIG	17	-1957.8115	4028.5454	0.1549	0.7370
GTRG	20	-1947.8984	4028.6466	0.1472	0.8842
GTRI	20	-1948.1930	4029.2357	0.1097	0.9939
GTRIG	21	-1947.7586	4035.0094	0.0061	1.0000
HKY	15	-1983.9873	4067.6118	0.0000	1.0000
GTR	19	-1971.8523	4069.9118	0.0000	1.0000
K2PI	13	-1996.6455	4079.6434	0.0000	1.0000
K2PG	13	-1996.7314	4079.8152	0.0000	1.0000
SYMI	17	-1983.6404	4080.2031	0.0000	1.0000
SYMG	17	-1984.1490	4081.2203	0.0000	1.0000
K2PIG	14	-1996.7793	4086.5535	0.0000	1.0000
SYMIG	18	-1984.1490	4087.8628	0.0000	1.0000
K2P	12	-2017.0762	4113.8622	0.0000	1.0000
SYM	16	-2004.2730	4114.8257	0.0000	1.0000
F81G	15	-2014.9730	4129.5832	0.0000	1.0000
F81I	15	-2015.1233	4129.8839	0.0000	1.0000
F81IG	16	-2014.9143	4136.1084	0.0000	1.0000
F81	14	-2033.7637	4160.5221	0.0000	1.0000
JC69I	12	-2046.0764	4171.8627	0.0000	1.0000
JC69G	12	-2046.4747	4172.6593	0.0000	1.0000
JC69IG	13	-2046.4748	4179.3019	0.0000	1.0000
JC69	11	-2063.6103	4200.2880	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_3284.phylip = 1 - 767;
 Partition Dummy = 1:591-tomodel-phylip/chr6_3284.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_3284.phylip = 1 - 767;
 Partition Dummy = 1:591-tomodel-phylip/chr6_3284.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_3284.phylip = 1 - 767;
 Partition Dummy = 1:591-tomodel-phylip/chr6_3284.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

