
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:49 04/04/2011

Input data from file "591-tomodel-phylip/chr6_3258.phylip" (7 taxa, 1163 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3125.8883	6291.7766	0.5338	0.5338
GTRI	20	-3126.5384	6293.0768	0.2787	0.8125
GTRIG	21	-3125.9345	6293.8689	0.1875	1.0000
HKYI	16	-3147.5585	6327.1170	0.0000	1.0000
HKYG	16	-3147.8770	6327.7540	0.0000	1.0000
HKYIG	17	-3147.8771	6329.7541	0.0000	1.0000
SYMG	17	-3159.7670	6353.5340	0.0000	1.0000
SYMI	17	-3160.1033	6354.2067	0.0000	1.0000
SYMIG	18	-3159.7677	6355.5355	0.0000	1.0000
K2PI	13	-3172.1538	6370.3076	0.0000	1.0000
K2PG	13	-3172.1819	6370.3638	0.0000	1.0000
K2PIG	14	-3172.1820	6372.3639	0.0000	1.0000
GTR	19	-3179.8438	6397.6876	0.0000	1.0000
F81I	15	-3192.5916	6415.1831	0.0000	1.0000
F81G	15	-3193.0401	6416.0801	0.0000	1.0000
F81IG	16	-3193.0401	6418.0803	0.0000	1.0000
HKY	15	-3202.1498	6434.2995	0.0000	1.0000
JC69I	12	-3213.4677	6450.9353	0.0000	1.0000
JC69G	12	-3213.6964	6451.3928	0.0000	1.0000
JC69IG	13	-3213.6964	6453.3928	0.0000	1.0000
SYM	16	-3214.5235	6461.0471	0.0000	1.0000
K2P	12	-3228.3311	6480.6622	0.0000	1.0000
F81	14	-3244.0055	6516.0111	0.0000	1.0000
JC69	11	-3266.1963	6554.3925	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-3125.8883	6392.9518	0.6448	0.6448
GTRI	20	-3126.5384	6394.2520	0.3366	0.9814
GTRIG	21	-3125.9345	6400.1028	0.0181	0.9994
HKYI	16	-3147.5585	6408.0571	0.0003	0.9997
HKYG	16	-3147.8770	6408.6941	0.0002	1.0000
HKYIG	17	-3147.8771	6415.7530	0.0000	1.0000
K2PI	13	-3172.1538	6436.0714	0.0000	1.0000
K2PG	13	-3172.1819	6436.1277	0.0000	1.0000
SYMG	17	-3159.7670	6439.5328	0.0000	1.0000
SYMI	17	-3160.1033	6440.2055	0.0000	1.0000
K2PIG	14	-3172.1820	6443.1865	0.0000	1.0000
SYMIG	18	-3159.7677	6446.5931	0.0000	1.0000
F81I	15	-3192.5916	6491.0645	0.0000	1.0000
F81G	15	-3193.0401	6491.9615	0.0000	1.0000
GTR	19	-3179.8438	6493.8040	0.0000	1.0000
F81IG	16	-3193.0401	6499.0204	0.0000	1.0000
HKY	15	-3202.1498	6510.1809	0.0000	1.0000
JC69I	12	-3213.4677	6511.6404	0.0000	1.0000
JC69G	12	-3213.6964	6512.0979	0.0000	1.0000
JC69IG	13	-3213.6964	6519.1566	0.0000	1.0000
K2P	12	-3228.3311	6541.3673	0.0000	1.0000
SYM	16	-3214.5235	6541.9872	0.0000	1.0000
F81	14	-3244.0055	6586.8337	0.0000	1.0000
JC69	11	-3266.1963	6610.0389	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_3258.phylip = 1 - 1163;
 Partition Dummy = 1:591-tomodel-phylip/chr6_3258.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_3258.phylip = 1 - 1163;
 Partition Dummy = 1:591-tomodel-phylip/chr6_3258.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_3258.phylip = 1 - 1163;
 Partition Dummy = 1:591-tomodel-phylip/chr6_3258.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

