
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:48 04/04/2011

Input data from file "591-tomodel-phylip/chr6_3252.phylip" (7 taxa, 1083 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3288.4285	6616.8569	0.4864	0.4864
GTRIG	21	-3287.6609	6617.3217	0.3855	0.8719
HKYG	16	-3294.4989	6620.9978	0.0613	0.9332
HKYIG	17	-3293.8683	6621.7366	0.0424	0.9756
GTRI	20	-3291.5806	6623.1611	0.0208	0.9964
HKYI	16	-3297.3471	6626.6942	0.0036	1.0000
K2PG	13	-3314.5274	6655.0548	0.0000	1.0000
K2PIG	14	-3313.8340	6655.6681	0.0000	1.0000
SYMG	17	-3311.5090	6657.0180	0.0000	1.0000
SYMIG	18	-3310.7632	6657.5264	0.0000	1.0000
K2PI	13	-3317.5133	6661.0266	0.0000	1.0000
SYMI	17	-3314.6499	6663.2998	0.0000	1.0000
F81G	15	-3345.2836	6720.5672	0.0000	1.0000
F81IG	16	-3344.9538	6721.9075	0.0000	1.0000
F81I	15	-3347.9894	6725.9789	0.0000	1.0000
JC69G	12	-3362.9337	6749.8675	0.0000	1.0000
GTR	19	-3356.4597	6750.9194	0.0000	1.0000
JC69IG	13	-3362.5644	6751.1287	0.0000	1.0000
JC69I	12	-3365.7148	6755.4297	0.0000	1.0000
HKY	15	-3363.8555	6757.7109	0.0000	1.0000
K2P	12	-3386.0979	6796.1957	0.0000	1.0000
SYM	16	-3382.8606	6797.7213	0.0000	1.0000
F81	14	-3413.5285	6855.0571	0.0000	1.0000
JC69	11	-3434.6574	6891.3149	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3294.4989	6700.7976	0.8964	0.8964
HKYI	16	-3297.3471	6706.4940	0.0519	0.9484
HKYIG	17	-3293.8683	6706.5239	0.0512	0.9996
GTRG	20	-3288.4285	6716.6067	0.0003	0.9999
K2PG	13	-3314.5274	6719.8922	0.0001	1.0000
GTRIG	21	-3287.6609	6722.0590	0.0000	1.0000
GTRI	20	-3291.5806	6722.9109	0.0000	1.0000
K2PIG	14	-3313.8340	6725.4930	0.0000	1.0000
K2PI	13	-3317.5133	6725.8640	0.0000	1.0000
SYMG	17	-3311.5090	6741.8054	0.0000	1.0000
SYMIG	18	-3310.7632	6747.3012	0.0000	1.0000
SYMI	17	-3314.6499	6748.0872	0.0000	1.0000
F81G	15	-3345.2836	6795.3796	0.0000	1.0000
F81I	15	-3347.9894	6800.7912	0.0000	1.0000
F81IG	16	-3344.9538	6801.7073	0.0000	1.0000
JC69G	12	-3362.9337	6809.7174	0.0000	1.0000
JC69I	12	-3365.7148	6815.2796	0.0000	1.0000
JC69IG	13	-3362.5644	6815.9661	0.0000	1.0000
HKY	15	-3363.8555	6832.5233	0.0000	1.0000
GTR	19	-3356.4597	6845.6817	0.0000	1.0000
K2P	12	-3386.0979	6856.0456	0.0000	1.0000
SYM	16	-3382.8606	6877.5211	0.0000	1.0000
F81	14	-3413.5285	6924.8820	0.0000	1.0000
JC69	11	-3434.6574	6946.1773	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_3252.phylip = 1 - 1083;
 Partition Dummy = 1:591-tomodel-phylip/chr6_3252.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_3252.phylip = 1 - 1083;
 Partition Dummy = 1:591-tomodel-phylip/chr6_3252.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_3252.phylip = 1 - 1083;
 Partition Dummy = 1:591-tomodel-phylip/chr6_3252.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

