
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:48 04/04/2011

Input data from file "591-tomodel-phylip/chr6_3231.phylip" (7 taxa, 853 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-3306.5143	6645.0285	0.5372	0.5372
HKYIG	17	-3306.2948	6646.5896	0.2461	0.7833
HKYI	16	-3307.5927	6647.1854	0.1827	0.9661
GTRG	20	-3305.9221	6651.8443	0.0178	0.9839
GTRIG	21	-3305.6637	6653.3275	0.0085	0.9923
GTRI	20	-3306.7631	6653.5263	0.0077	1.0000
SYMI	17	-3323.0115	6680.0231	0.0000	1.0000
SYMG	17	-3323.4375	6680.8749	0.0000	1.0000
SYMIG	18	-3322.4754	6680.9509	0.0000	1.0000
K2PI	13	-3327.7196	6681.4393	0.0000	1.0000
K2PG	13	-3327.7483	6681.4966	0.0000	1.0000
K2PIG	14	-3327.1106	6682.2212	0.0000	1.0000
HKY	15	-3354.3759	6738.7518	0.0000	1.0000
GTR	19	-3354.1019	6746.2038	0.0000	1.0000
K2P	12	-3376.7702	6777.5405	0.0000	1.0000
SYM	16	-3373.9249	6779.8497	0.0000	1.0000
F81I	15	-3389.8417	6809.6834	0.0000	1.0000
F81IG	16	-3389.8240	6811.6481	0.0000	1.0000
F81G	15	-3391.3226	6812.6453	0.0000	1.0000
JC69I	12	-3410.9045	6845.8090	0.0000	1.0000
JC69IG	13	-3410.9057	6847.8114	0.0000	1.0000
JC69G	12	-3412.9039	6849.8079	0.0000	1.0000
F81	14	-3433.3377	6894.6755	0.0000	1.0000
JC69	11	-3455.1591	6932.3181	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3306.5143	6721.0087	0.7232	0.7232
HKYI	16	-3307.5927	6723.1656	0.2460	0.9691
HKYIG	17	-3306.2948	6727.3185	0.0308	1.0000
K2PI	13	-3327.7196	6743.1732	0.0000	1.0000
K2PG	13	-3327.7483	6743.2305	0.0000	1.0000
GTRG	20	-3305.9221	6746.8195	0.0000	1.0000
GTRI	20	-3306.7631	6748.5015	0.0000	1.0000
K2PIG	14	-3327.1106	6748.7038	0.0000	1.0000
GTRIG	21	-3305.6637	6753.0514	0.0000	1.0000
SYMI	17	-3323.0115	6760.7520	0.0000	1.0000
SYMG	17	-3323.4375	6761.6039	0.0000	1.0000
SYMIG	18	-3322.4754	6766.4286	0.0000	1.0000
HKY	15	-3354.3759	6809.9832	0.0000	1.0000
K2P	12	-3376.7702	6834.5256	0.0000	1.0000
GTR	19	-3354.1019	6836.4302	0.0000	1.0000
SYM	16	-3373.9249	6855.8299	0.0000	1.0000
F81I	15	-3389.8417	6880.9148	0.0000	1.0000
F81G	15	-3391.3226	6883.8767	0.0000	1.0000
F81IG	16	-3389.8240	6887.6282	0.0000	1.0000
JC69I	12	-3410.9045	6902.7941	0.0000	1.0000
JC69G	12	-3412.9039	6906.7930	0.0000	1.0000
JC69IG	13	-3410.9057	6909.5453	0.0000	1.0000
F81	14	-3433.3377	6961.1581	0.0000	1.0000
JC69	11	-3455.1591	6984.5545	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_3231.phylip = 1 - 853;
 Partition Dummy = 1:591-tomodel-phylip/chr6_3231.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_3231.phylip = 1 - 853;
 Partition Dummy = 1:591-tomodel-phylip/chr6_3231.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr6_3231.phylip = 1 - 853;
 Partition Dummy = 1:591-tomodel-phylip/chr6_3231.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

