
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:44 04/04/2011

Input data from file "591-tomodel-phylip/chr5_9123.phylip" (7 taxa, 584 characters)

Minimum AIC  model: HKYI
Minimum AICc model: HKYI
Minimum BIC  model: HKYI


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYI	16	-1531.6843	3096.3280	0.4213	0.4213
HKYG	16	-1532.0518	3097.0631	0.2917	0.7131
HKYIG	17	-1532.0519	3099.1851	0.1010	0.8141
GTRI	20	-1528.8970	3099.2860	0.0960	0.9101
GTRG	20	-1529.2557	3100.0033	0.0671	0.9771
GTRIG	21	-1529.2555	3102.1551	0.0229	1.0000
F81I	15	-1549.2041	3129.2532	0.0000	1.0000
F81G	15	-1549.5499	3129.9449	0.0000	1.0000
HKY	15	-1550.0984	3131.0418	0.0000	1.0000
F81IG	16	-1549.5500	3132.0593	0.0000	1.0000
GTR	19	-1547.8096	3134.9666	0.0000	1.0000
F81	14	-1565.2426	3159.2234	0.0000	1.0000
SYMI	17	-1564.8581	3164.7974	0.0000	1.0000
SYMG	17	-1565.0177	3165.1167	0.0000	1.0000
SYMIG	18	-1565.0177	3167.2461	0.0000	1.0000
K2PI	13	-1572.4724	3171.5833	0.0000	1.0000
K2PG	13	-1572.8435	3172.3255	0.0000	1.0000
K2PIG	14	-1572.8435	3174.4252	0.0000	1.0000
JC69I	12	-1585.0068	3194.5599	0.0000	1.0000
SYM	16	-1580.9851	3194.9297	0.0000	1.0000
JC69G	12	-1585.3557	3195.2579	0.0000	1.0000
JC69IG	13	-1585.4932	3197.6249	0.0000	1.0000
K2P	12	-1587.7380	3200.0225	0.0000	1.0000
JC69	11	-1600.0394	3222.5403	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYI	16	-1531.6843	3095.3685	0.3955	0.3955
HKYG	16	-1532.0518	3096.1036	0.2738	0.6693
GTRI	20	-1528.8970	3097.7940	0.1176	0.7869
HKYIG	17	-1532.0519	3098.1038	0.1007	0.8876
GTRG	20	-1529.2557	3098.5113	0.0822	0.9698
GTRIG	21	-1529.2555	3100.5110	0.0302	1.0000
F81I	15	-1549.2041	3128.4081	0.0000	1.0000
F81G	15	-1549.5499	3129.0998	0.0000	1.0000
HKY	15	-1550.0984	3130.1967	0.0000	1.0000
F81IG	16	-1549.5500	3131.0999	0.0000	1.0000
GTR	19	-1547.8096	3133.6191	0.0000	1.0000
F81	14	-1565.2426	3158.4853	0.0000	1.0000
SYMI	17	-1564.8581	3163.7162	0.0000	1.0000
SYMG	17	-1565.0177	3164.0354	0.0000	1.0000
SYMIG	18	-1565.0177	3166.0355	0.0000	1.0000
K2PI	13	-1572.4724	3170.9447	0.0000	1.0000
K2PG	13	-1572.8435	3171.6869	0.0000	1.0000
K2PIG	14	-1572.8435	3173.6870	0.0000	1.0000
SYM	16	-1580.9851	3193.9703	0.0000	1.0000
JC69I	12	-1585.0068	3194.0135	0.0000	1.0000
JC69G	12	-1585.3557	3194.7115	0.0000	1.0000
JC69IG	13	-1585.4932	3196.9863	0.0000	1.0000
K2P	12	-1587.7380	3199.4761	0.0000	1.0000
JC69	11	-1600.0394	3222.0787	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-1531.6843	3165.2870	0.5810	0.5810
HKYG	16	-1532.0518	3166.0220	0.4023	0.9833
HKYIG	17	-1532.0519	3172.3921	0.0166	1.0000
GTRI	20	-1528.8970	3185.1920	0.0000	1.0000
GTRG	20	-1529.2557	3185.9094	0.0000	1.0000
GTRIG	21	-1529.2555	3192.2789	0.0000	1.0000
F81I	15	-1549.2041	3193.9566	0.0000	1.0000
F81G	15	-1549.5499	3194.6483	0.0000	1.0000
HKY	15	-1550.0984	3195.7453	0.0000	1.0000
F81IG	16	-1549.5500	3201.0183	0.0000	1.0000
GTR	19	-1547.8096	3216.6472	0.0000	1.0000
F81	14	-1565.2426	3219.6639	0.0000	1.0000
K2PI	13	-1572.4724	3227.7534	0.0000	1.0000
K2PG	13	-1572.8435	3228.4957	0.0000	1.0000
K2PIG	14	-1572.8435	3234.8657	0.0000	1.0000
SYMI	17	-1564.8581	3238.0045	0.0000	1.0000
SYMG	17	-1565.0177	3238.3238	0.0000	1.0000
SYMIG	18	-1565.0177	3244.6937	0.0000	1.0000
JC69I	12	-1585.0068	3246.4523	0.0000	1.0000
JC69G	12	-1585.3557	3247.1503	0.0000	1.0000
K2P	12	-1587.7380	3251.9149	0.0000	1.0000
JC69IG	13	-1585.4932	3253.7950	0.0000	1.0000
SYM	16	-1580.9851	3263.8887	0.0000	1.0000
JC69	11	-1600.0394	3270.1477	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_9123.phylip = 1 - 584;
 Partition Dummy = 1:591-tomodel-phylip/chr5_9123.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_9123.phylip = 1 - 584;
 Partition Dummy = 1:591-tomodel-phylip/chr5_9123.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_9123.phylip = 1 - 584;
 Partition Dummy = 1:591-tomodel-phylip/chr5_9123.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

