
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:43 04/04/2011

Input data from file "591-tomodel-phylip/chr5_3415.phylip" (7 taxa, 1006 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2927.4547	5894.9094	0.3666	0.3666
GTRI	20	-2927.7818	5895.5637	0.2643	0.6309
GTRIG	21	-2927.4723	5896.9446	0.1325	0.7634
HKYG	16	-2932.6877	5897.3755	0.1068	0.8702
HKYI	16	-2932.8490	5897.6980	0.0909	0.9611
HKYIG	17	-2932.6989	5899.3978	0.0389	1.0000
GTR	19	-2944.3471	5926.6942	0.0000	1.0000
HKY	15	-2949.5336	5929.0672	0.0000	1.0000
SYMI	17	-2966.8301	5967.6601	0.0000	1.0000
SYMG	17	-2966.8908	5967.7815	0.0000	1.0000
SYMIG	18	-2966.9116	5969.8231	0.0000	1.0000
K2PI	13	-2972.9484	5971.8968	0.0000	1.0000
K2PG	13	-2973.5344	5973.0689	0.0000	1.0000
K2PIG	14	-2972.9597	5973.9195	0.0000	1.0000
SYM	16	-2983.2053	5998.4106	0.0000	1.0000
K2P	12	-2989.3858	6002.7717	0.0000	1.0000
F81I	15	-2999.3964	6028.7928	0.0000	1.0000
F81IG	16	-2999.4204	6030.8409	0.0000	1.0000
F81G	15	-3002.4828	6034.9656	0.0000	1.0000
F81	14	-3016.4197	6060.8394	0.0000	1.0000
JC69I	12	-3032.2605	6088.5209	0.0000	1.0000
JC69G	12	-3033.2662	6090.5323	0.0000	1.0000
JC69IG	13	-3032.2854	6090.5708	0.0000	1.0000
JC69	11	-3051.1705	6124.3410	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2932.6877	5975.9953	0.5312	0.5312
HKYI	16	-2932.8490	5976.3178	0.4521	0.9833
HKYIG	17	-2932.6989	5982.9313	0.0166	0.9998
GTRG	20	-2927.4547	5993.1842	0.0001	0.9999
GTRI	20	-2927.7818	5993.8384	0.0001	1.0000
GTRIG	21	-2927.4723	6000.1331	0.0000	1.0000
HKY	15	-2949.5336	6002.7732	0.0000	1.0000
GTR	19	-2944.3471	6020.0552	0.0000	1.0000
K2PI	13	-2972.9484	6035.7754	0.0000	1.0000
K2PG	13	-2973.5344	6036.9475	0.0000	1.0000
K2PIG	14	-2972.9597	6042.7118	0.0000	1.0000
SYMI	17	-2966.8301	6051.1937	0.0000	1.0000
SYMG	17	-2966.8908	6051.3151	0.0000	1.0000
SYMIG	18	-2966.9116	6058.2704	0.0000	1.0000
K2P	12	-2989.3858	6061.7365	0.0000	1.0000
SYM	16	-2983.2053	6077.0304	0.0000	1.0000
F81I	15	-2999.3964	6102.4988	0.0000	1.0000
F81G	15	-3002.4828	6108.6717	0.0000	1.0000
F81IG	16	-2999.4204	6109.4607	0.0000	1.0000
F81	14	-3016.4197	6129.6317	0.0000	1.0000
JC69I	12	-3032.2605	6147.4858	0.0000	1.0000
JC69G	12	-3033.2662	6149.4972	0.0000	1.0000
JC69IG	13	-3032.2854	6154.4494	0.0000	1.0000
JC69	11	-3051.1705	6178.3921	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_3415.phylip = 1 - 1006;
 Partition Dummy = 1:591-tomodel-phylip/chr5_3415.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_3415.phylip = 1 - 1006;
 Partition Dummy = 1:591-tomodel-phylip/chr5_3415.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_3415.phylip = 1 - 1006;
 Partition Dummy = 1:591-tomodel-phylip/chr5_3415.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

