
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:42 04/04/2011

Input data from file "591-tomodel-phylip/chr5_3396.phylip" (7 taxa, 770 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: HKYI


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRI	20	-2546.0222	5133.1659	0.4387	0.4387
HKYI	16	-2551.2134	5135.1493	0.1627	0.6014
GTRG	20	-2547.0682	5135.2579	0.1541	0.7556
GTRIG	21	-2546.0382	5135.3117	0.1500	0.9056
HKYIG	17	-2551.2427	5137.2992	0.0555	0.9612
HKYG	16	-2552.6465	5138.0154	0.0388	1.0000
GTR	19	-2560.4553	5159.9240	0.0000	1.0000
HKY	15	-2565.7357	5162.1079	0.0000	1.0000
K2PI	13	-2591.0963	5208.6741	0.0000	1.0000
K2PIG	14	-2591.1271	5210.8105	0.0000	1.0000
K2PG	13	-2592.5226	5211.5267	0.0000	1.0000
SYMI	17	-2590.1500	5215.1138	0.0000	1.0000
SYMIG	18	-2590.1799	5217.2705	0.0000	1.0000
SYMG	17	-2591.5415	5217.8967	0.0000	1.0000
F81I	15	-2594.7683	5220.1732	0.0000	1.0000
F81IG	16	-2594.7997	5222.3219	0.0000	1.0000
F81G	15	-2596.1362	5222.9089	0.0000	1.0000
K2P	12	-2606.3799	5237.1720	0.0000	1.0000
SYM	16	-2605.2516	5243.2257	0.0000	1.0000
F81	14	-2608.3986	5245.3535	0.0000	1.0000
JC69I	12	-2627.2382	5278.8885	0.0000	1.0000
JC69IG	13	-2627.2684	5281.0183	0.0000	1.0000
JC69G	12	-2628.5670	5281.5461	0.0000	1.0000
JC69	11	-2641.4306	5305.2094	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-2546.0222	5132.0444	0.4549	0.4549
GTRIG	21	-2546.0382	5134.0764	0.1647	0.6196
GTRG	20	-2547.0682	5134.1364	0.1598	0.7794
HKYI	16	-2551.2134	5134.4269	0.1382	0.9176
HKYIG	17	-2551.2427	5136.4854	0.0494	0.9670
HKYG	16	-2552.6465	5137.2930	0.0330	1.0000
GTR	19	-2560.4553	5158.9107	0.0000	1.0000
HKY	15	-2565.7357	5161.4713	0.0000	1.0000
K2PI	13	-2591.0963	5208.1927	0.0000	1.0000
K2PIG	14	-2591.1271	5210.2542	0.0000	1.0000
K2PG	13	-2592.5226	5211.0453	0.0000	1.0000
SYMI	17	-2590.1500	5214.3000	0.0000	1.0000
SYMIG	18	-2590.1799	5216.3597	0.0000	1.0000
SYMG	17	-2591.5415	5217.0829	0.0000	1.0000
F81I	15	-2594.7683	5219.5366	0.0000	1.0000
F81IG	16	-2594.7997	5221.5995	0.0000	1.0000
F81G	15	-2596.1362	5222.2723	0.0000	1.0000
K2P	12	-2606.3799	5236.7598	0.0000	1.0000
SYM	16	-2605.2516	5242.5033	0.0000	1.0000
F81	14	-2608.3986	5244.7972	0.0000	1.0000
JC69I	12	-2627.2382	5278.4764	0.0000	1.0000
JC69IG	13	-2627.2684	5280.5368	0.0000	1.0000
JC69G	12	-2628.5670	5281.1340	0.0000	1.0000
JC69	11	-2641.4306	5304.8611	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-2551.2134	5208.7691	0.7849	0.7849
HKYG	16	-2552.6465	5211.6352	0.1873	0.9722
HKYIG	17	-2551.2427	5215.4740	0.0275	0.9997
GTRI	20	-2546.0222	5224.9722	0.0002	0.9999
GTRG	20	-2547.0682	5227.0642	0.0001	1.0000
HKY	15	-2565.7357	5231.1672	0.0000	1.0000
GTRIG	21	-2546.0382	5231.6506	0.0000	1.0000
GTR	19	-2560.4553	5247.1921	0.0000	1.0000
K2PI	13	-2591.0963	5268.5957	0.0000	1.0000
K2PG	13	-2592.5226	5271.4483	0.0000	1.0000
K2PIG	14	-2591.1271	5275.3037	0.0000	1.0000
F81I	15	-2594.7683	5289.2325	0.0000	1.0000
F81G	15	-2596.1362	5291.9682	0.0000	1.0000
K2P	12	-2606.3799	5292.5165	0.0000	1.0000
SYMI	17	-2590.1500	5293.2886	0.0000	1.0000
F81IG	16	-2594.7997	5295.9417	0.0000	1.0000
SYMG	17	-2591.5415	5296.0716	0.0000	1.0000
SYMIG	18	-2590.1799	5299.9947	0.0000	1.0000
F81	14	-2608.3986	5309.8467	0.0000	1.0000
SYM	16	-2605.2516	5316.8455	0.0000	1.0000
JC69I	12	-2627.2382	5334.2331	0.0000	1.0000
JC69G	12	-2628.5670	5336.8907	0.0000	1.0000
JC69IG	13	-2627.2684	5340.9399	0.0000	1.0000
JC69	11	-2641.4306	5355.9714	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_3396.phylip = 1 - 770;
 Partition Dummy = 1:591-tomodel-phylip/chr5_3396.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_3396.phylip = 1 - 770;
 Partition Dummy = 1:591-tomodel-phylip/chr5_3396.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_3396.phylip = 1 - 770;
 Partition Dummy = 1:591-tomodel-phylip/chr5_3396.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

