
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:45 04/04/2011

Input data from file "591-tomodel-phylip/chr5_14870.phylip" (7 taxa, 530 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: K2PI


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRI	20	-1454.5423	2950.7348	0.3840	0.3840
GTRG	20	-1455.1824	2952.0152	0.2024	0.5864
HKYI	16	-1459.6342	2952.3288	0.1730	0.7594
HKYG	16	-1459.9926	2953.0456	0.1209	0.8804
GTRIG	21	-1455.1825	2954.1840	0.0684	0.9488
HKYIG	17	-1459.9926	2955.1806	0.0416	0.9904
K2PI	13	-1466.7430	2960.1915	0.0034	0.9938
K2PG	13	-1467.1786	2961.0626	0.0022	0.9960
SYMI	17	-1463.0387	2961.2728	0.0020	0.9979
SYMG	17	-1463.7584	2962.7120	0.0010	0.9989
K2PIG	14	-1467.1786	2963.1728	0.0008	0.9997
SYMIG	18	-1463.7584	2964.8554	0.0003	1.0000
GTR	19	-1468.7499	2976.9900	0.0000	1.0000
HKY	15	-1474.1281	2979.1900	0.0000	1.0000
K2P	12	-1481.1105	2986.8244	0.0000	1.0000
SYM	16	-1477.2156	2987.4916	0.0000	1.0000
F81I	15	-1479.1418	2989.2175	0.0000	1.0000
F81G	15	-1479.4823	2989.8984	0.0000	1.0000
F81IG	16	-1479.4823	2992.0250	0.0000	1.0000
JC69I	12	-1485.3479	2995.2993	0.0000	1.0000
JC69G	12	-1485.7934	2996.1904	0.0000	1.0000
JC69IG	13	-1485.7935	2998.2924	0.0000	1.0000
F81	14	-1493.3877	3015.5909	0.0000	1.0000
JC69	11	-1499.5639	3021.6375	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-1454.5423	2949.0845	0.4176	0.4176
GTRG	20	-1455.1824	2950.3649	0.2202	0.6377
HKYI	16	-1459.6342	2951.2684	0.1401	0.7779
HKYG	16	-1459.9926	2951.9852	0.0979	0.8758
GTRIG	21	-1455.1825	2952.3651	0.0810	0.9568
HKYIG	17	-1459.9926	2953.9853	0.0360	0.9928
K2PI	13	-1466.7430	2959.4861	0.0023	0.9951
SYMI	17	-1463.0387	2960.0775	0.0017	0.9968
K2PG	13	-1467.1786	2960.3571	0.0015	0.9983
SYMG	17	-1463.7584	2961.5167	0.0008	0.9991
K2PIG	14	-1467.1786	2962.3573	0.0005	0.9997
SYMIG	18	-1463.7584	2963.5168	0.0003	1.0000
GTR	19	-1468.7499	2975.4998	0.0000	1.0000
HKY	15	-1474.1281	2978.2561	0.0000	1.0000
K2P	12	-1481.1105	2986.2210	0.0000	1.0000
SYM	16	-1477.2156	2986.4312	0.0000	1.0000
F81I	15	-1479.1418	2988.2836	0.0000	1.0000
F81G	15	-1479.4823	2988.9645	0.0000	1.0000
F81IG	16	-1479.4823	2990.9646	0.0000	1.0000
JC69I	12	-1485.3479	2994.6959	0.0000	1.0000
JC69G	12	-1485.7934	2995.5869	0.0000	1.0000
JC69IG	13	-1485.7935	2997.5870	0.0000	1.0000
F81	14	-1493.3877	3014.7753	0.0000	1.0000
JC69	11	-1499.5639	3021.1278	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PI	13	-1466.7430	3015.0335	0.5409	0.5409
K2PG	13	-1467.1786	3015.9045	0.3499	0.8909
HKYI	16	-1459.6342	3019.6344	0.0542	0.9451
HKYG	16	-1459.9926	3020.3512	0.0379	0.9830
K2PIG	14	-1467.1786	3022.1775	0.0152	0.9982
HKYIG	17	-1459.9926	3026.6242	0.0016	0.9998
SYMI	17	-1463.0387	3032.7164	0.0001	0.9999
SYMG	17	-1463.7584	3034.1556	0.0000	0.9999
GTRI	20	-1454.5423	3034.5421	0.0000	1.0000
GTRG	20	-1455.1824	3035.8224	0.0000	1.0000
K2P	12	-1481.1105	3037.4955	0.0000	1.0000
SYMIG	18	-1463.7584	3040.4286	0.0000	1.0000
GTRIG	21	-1455.1825	3042.0955	0.0000	1.0000
HKY	15	-1474.1281	3042.3493	0.0000	1.0000
JC69I	12	-1485.3479	3045.9704	0.0000	1.0000
JC69G	12	-1485.7934	3046.8614	0.0000	1.0000
F81I	15	-1479.1418	3052.3768	0.0000	1.0000
F81G	15	-1479.4823	3053.0577	0.0000	1.0000
JC69IG	13	-1485.7935	3053.1344	0.0000	1.0000
SYM	16	-1477.2156	3054.7972	0.0000	1.0000
GTR	19	-1468.7499	3056.6844	0.0000	1.0000
F81IG	16	-1479.4823	3059.3306	0.0000	1.0000
JC69	11	-1499.5639	3068.1295	0.0000	1.0000
F81	14	-1493.3877	3074.5956	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_14870.phylip = 1 - 530;
 Partition Dummy = 1:591-tomodel-phylip/chr5_14870.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_14870.phylip = 1 - 530;
 Partition Dummy = 1:591-tomodel-phylip/chr5_14870.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (K2PI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_14870.phylip = 1 - 530;
 Partition Dummy = 1:591-tomodel-phylip/chr5_14870.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

