
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:43 04/04/2011

Input data from file "591-tomodel-phylip/chr5_12835.phylip" (7 taxa, 901 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3316.4256	6672.8512	0.6531	0.6531
GTRIG	21	-3316.2271	6674.4543	0.2930	0.9461
GTRI	20	-3319.0516	6678.1031	0.0473	0.9934
HKYG	16	-3325.4758	6682.9515	0.0042	0.9976
HKYIG	17	-3325.2654	6684.5308	0.0019	0.9995
HKYI	16	-3327.5533	6687.1067	0.0005	1.0000
K2PG	13	-3366.7132	6759.4265	0.0000	1.0000
K2PIG	14	-3366.5474	6761.0948	0.0000	1.0000
SYMG	17	-3364.2980	6762.5959	0.0000	1.0000
K2PI	13	-3368.5791	6763.1582	0.0000	1.0000
SYMIG	18	-3364.1215	6764.2429	0.0000	1.0000
SYMI	17	-3366.2195	6766.4389	0.0000	1.0000
GTR	19	-3365.1069	6768.2138	0.0000	1.0000
HKY	15	-3379.1451	6788.2901	0.0000	1.0000
SYM	16	-3413.3181	6858.6361	0.0000	1.0000
K2P	12	-3418.9806	6861.9611	0.0000	1.0000
F81G	15	-3417.9684	6865.9368	0.0000	1.0000
F81I	15	-3418.4231	6866.8461	0.0000	1.0000
F81IG	16	-3417.4804	6866.9608	0.0000	1.0000
JC69I	12	-3453.4064	6930.8128	0.0000	1.0000
JC69G	12	-3453.7320	6931.4641	0.0000	1.0000
JC69IG	13	-3452.9581	6931.9162	0.0000	1.0000
F81	14	-3460.8928	6949.7856	0.0000	1.0000
JC69	11	-3499.2358	7020.4716	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3325.4758	6759.8076	0.8489	0.8489
HKYI	16	-3327.5533	6763.9627	0.1063	0.9552
HKYIG	17	-3325.2654	6766.1904	0.0349	0.9901
GTRG	20	-3316.4256	6768.9213	0.0089	0.9990
GTRI	20	-3319.0516	6774.1732	0.0006	0.9996
GTRIG	21	-3316.2271	6775.3279	0.0004	1.0000
K2PG	13	-3366.7132	6821.8720	0.0000	1.0000
K2PI	13	-3368.5791	6825.6038	0.0000	1.0000
K2PIG	14	-3366.5474	6828.3438	0.0000	1.0000
SYMG	17	-3364.2980	6844.2555	0.0000	1.0000
SYMI	17	-3366.2195	6848.0985	0.0000	1.0000
SYMIG	18	-3364.1215	6850.7060	0.0000	1.0000
GTR	19	-3365.1069	6859.4804	0.0000	1.0000
HKY	15	-3379.1451	6860.3427	0.0000	1.0000
K2P	12	-3418.9806	6919.6032	0.0000	1.0000
SYM	16	-3413.3181	6935.4922	0.0000	1.0000
F81G	15	-3417.9684	6937.9894	0.0000	1.0000
F81I	15	-3418.4231	6938.8987	0.0000	1.0000
F81IG	16	-3417.4804	6943.8169	0.0000	1.0000
JC69I	12	-3453.4064	6988.4549	0.0000	1.0000
JC69G	12	-3453.7320	6989.1061	0.0000	1.0000
JC69IG	13	-3452.9581	6994.3618	0.0000	1.0000
F81	14	-3460.8928	7017.0346	0.0000	1.0000
JC69	11	-3499.2358	7073.3102	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_12835.phylip = 1 - 901;
 Partition Dummy = 1:591-tomodel-phylip/chr5_12835.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_12835.phylip = 1 - 901;
 Partition Dummy = 1:591-tomodel-phylip/chr5_12835.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_12835.phylip = 1 - 901;
 Partition Dummy = 1:591-tomodel-phylip/chr5_12835.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

