
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:42 04/04/2011

Input data from file "591-tomodel-phylip/chr5_11772.phylip" (7 taxa, 437 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1394.7045	2831.4283	0.5888	0.5888
GTRIG	21	-1394.6480	2833.5225	0.2066	0.7955
GTRI	20	-1395.7664	2833.5521	0.2036	0.9991
HKYG	16	-1406.1056	2845.5064	0.0005	0.9996
HKYIG	17	-1405.9031	2847.2668	0.0002	0.9998
HKYI	16	-1407.1874	2847.6700	0.0002	1.0000
SYMG	17	-1408.8520	2853.1647	0.0000	1.0000
SYMIG	18	-1408.6222	2854.8807	0.0000	1.0000
SYMI	17	-1410.2664	2855.9934	0.0000	1.0000
K2PG	13	-1415.1581	2857.1766	0.0000	1.0000
K2PIG	14	-1414.8323	2858.6599	0.0000	1.0000
K2PI	13	-1416.6172	2860.0949	0.0000	1.0000
GTR	19	-1421.3412	2882.5049	0.0000	1.0000
F81G	15	-1431.7907	2894.7216	0.0000	1.0000
F81IG	16	-1431.6970	2896.6892	0.0000	1.0000
F81I	15	-1432.8670	2896.8740	0.0000	1.0000
HKY	15	-1434.4141	2899.9683	0.0000	1.0000
JC69G	12	-1439.5989	2903.9336	0.0000	1.0000
JC69IG	13	-1439.4248	2905.7102	0.0000	1.0000
JC69I	12	-1440.8224	2906.3807	0.0000	1.0000
SYM	16	-1436.6016	2906.4984	0.0000	1.0000
K2P	12	-1444.6949	2914.1256	0.0000	1.0000
F81	14	-1458.5006	2945.9964	0.0000	1.0000
JC69	11	-1467.0751	2956.7713	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1394.7045	2829.4090	0.5760	0.5760
GTRIG	21	-1394.6480	2831.2960	0.2242	0.8002
GTRI	20	-1395.7664	2831.5329	0.1992	0.9994
HKYG	16	-1406.1056	2844.2111	0.0004	0.9997
HKYIG	17	-1405.9031	2845.8062	0.0002	0.9999
HKYI	16	-1407.1874	2846.3747	0.0001	1.0000
SYMG	17	-1408.8520	2851.7041	0.0000	1.0000
SYMIG	18	-1408.6222	2853.2443	0.0000	1.0000
SYMI	17	-1410.2664	2854.5328	0.0000	1.0000
K2PG	13	-1415.1581	2856.3161	0.0000	1.0000
K2PIG	14	-1414.8323	2857.6647	0.0000	1.0000
K2PI	13	-1416.6172	2859.2343	0.0000	1.0000
GTR	19	-1421.3412	2880.6823	0.0000	1.0000
F81G	15	-1431.7907	2893.5815	0.0000	1.0000
F81IG	16	-1431.6970	2895.3940	0.0000	1.0000
F81I	15	-1432.8670	2895.7339	0.0000	1.0000
HKY	15	-1434.4141	2898.8281	0.0000	1.0000
JC69G	12	-1439.5989	2903.1977	0.0000	1.0000
JC69IG	13	-1439.4248	2904.8496	0.0000	1.0000
SYM	16	-1436.6016	2905.2032	0.0000	1.0000
JC69I	12	-1440.8224	2905.6449	0.0000	1.0000
K2P	12	-1444.6949	2913.3897	0.0000	1.0000
F81	14	-1458.5006	2945.0012	0.0000	1.0000
JC69	11	-1467.0751	2956.1501	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-1415.1581	2909.3552	0.3106	0.3106
HKYG	16	-1406.1056	2909.4901	0.2903	0.6009
GTRG	20	-1394.7045	2911.0077	0.1359	0.7368
HKYI	16	-1407.1874	2911.6537	0.0984	0.8352
K2PI	13	-1416.6172	2912.2735	0.0722	0.9074
GTRI	20	-1395.7664	2913.1315	0.0470	0.9544
K2PIG	14	-1414.8323	2914.7837	0.0206	0.9750
HKYIG	17	-1405.9031	2915.1651	0.0170	0.9920
GTRIG	21	-1394.6480	2916.9746	0.0069	0.9988
SYMG	17	-1408.8520	2921.0629	0.0009	0.9997
SYMI	17	-1410.2664	2923.8916	0.0002	0.9999
SYMIG	18	-1408.6222	2926.6831	0.0001	1.0000
JC69G	12	-1439.5989	2952.1569	0.0000	1.0000
JC69I	12	-1440.8224	2954.6041	0.0000	1.0000
F81G	15	-1431.7907	2954.7805	0.0000	1.0000
F81I	15	-1432.8670	2956.9329	0.0000	1.0000
JC69IG	13	-1439.4248	2957.8888	0.0000	1.0000
GTR	19	-1421.3412	2958.2011	0.0000	1.0000
HKY	15	-1434.4141	2960.0271	0.0000	1.0000
F81IG	16	-1431.6970	2960.6729	0.0000	1.0000
K2P	12	-1444.6949	2962.3489	0.0000	1.0000
SYM	16	-1436.6016	2970.4821	0.0000	1.0000
JC69	11	-1467.0751	3001.0294	0.0000	1.0000
F81	14	-1458.5006	3002.1202	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11772.phylip = 1 - 437;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11772.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11772.phylip = 1 - 437;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11772.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11772.phylip = 1 - 437;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11772.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

