
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:41 04/04/2011

Input data from file "591-tomodel-phylip/chr5_11637.phylip" (7 taxa, 1036 characters)

Minimum AIC  model: K2PI
Minimum AICc model: K2PI
Minimum BIC  model: K2PI


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
K2PI	13	-3656.4559	7338.9117	0.4076	0.4076
K2PG	13	-3656.9037	7339.8074	0.2605	0.6681
K2PIG	14	-3656.3392	7340.6783	0.1685	0.8366
SYMI	17	-3654.8063	7343.6126	0.0389	0.8754
HKYI	16	-3655.8930	7343.7861	0.0356	0.9110
SYMG	17	-3655.1550	7344.3101	0.0274	0.9385
HKYG	16	-3656.3069	7344.6138	0.0236	0.9620
SYMIG	18	-3654.6655	7345.3311	0.0165	0.9785
HKYIG	17	-3655.7670	7345.5339	0.0149	0.9933
GTRI	20	-3654.3122	7348.6244	0.0032	0.9965
GTRG	20	-3654.6958	7349.3916	0.0022	0.9987
GTRIG	21	-3654.1811	7350.3622	0.0013	1.0000
K2P	12	-3699.0800	7422.1600	0.0000	1.0000
SYM	16	-3696.3017	7424.6035	0.0000	1.0000
HKY	15	-3698.3600	7426.7200	0.0000	1.0000
JC69I	12	-3702.5696	7429.1392	0.0000	1.0000
GTR	19	-3695.8019	7429.6038	0.0000	1.0000
F81I	15	-3701.3069	7432.6138	0.0000	1.0000
JC69G	12	-3704.3364	7432.6728	0.0000	1.0000
JC69IG	13	-3704.1746	7434.3492	0.0000	1.0000
F81G	15	-3703.0821	7436.1641	0.0000	1.0000
F81IG	16	-3702.9129	7437.8258	0.0000	1.0000
JC69	11	-3743.1886	7508.3773	0.0000	1.0000
F81	14	-3742.1926	7512.3852	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PI	13	-3656.4559	7403.1723	0.5974	0.5974
K2PG	13	-3656.9037	7404.0680	0.3817	0.9791
K2PIG	14	-3656.3392	7409.8821	0.0209	0.9999
HKYI	16	-3655.8930	7422.8760	0.0000	1.0000
HKYG	16	-3656.3069	7423.7038	0.0000	1.0000
SYMI	17	-3654.8063	7427.6457	0.0000	1.0000
SYMG	17	-3655.1550	7428.3432	0.0000	1.0000
HKYIG	17	-3655.7670	7429.5670	0.0000	1.0000
SYMIG	18	-3654.6655	7434.3073	0.0000	1.0000
GTRI	20	-3654.3122	7447.4869	0.0000	1.0000
GTRG	20	-3654.6958	7448.2541	0.0000	1.0000
GTRIG	21	-3654.1811	7454.1678	0.0000	1.0000
K2P	12	-3699.0800	7481.4774	0.0000	1.0000
JC69I	12	-3702.5696	7488.4566	0.0000	1.0000
JC69G	12	-3704.3364	7491.9903	0.0000	1.0000
JC69IG	13	-3704.1746	7498.6098	0.0000	1.0000
HKY	15	-3698.3600	7500.8668	0.0000	1.0000
SYM	16	-3696.3017	7503.6934	0.0000	1.0000
F81I	15	-3701.3069	7506.7607	0.0000	1.0000
F81G	15	-3703.0821	7510.3110	0.0000	1.0000
F81IG	16	-3702.9129	7516.9158	0.0000	1.0000
GTR	19	-3695.8019	7523.5231	0.0000	1.0000
JC69	11	-3743.1886	7562.7516	0.0000	1.0000
F81	14	-3742.1926	7581.5889	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (K2PI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11637.phylip = 1 - 1036;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11637.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (K2PI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11637.phylip = 1 - 1036;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11637.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (K2PI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11637.phylip = 1 - 1036;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11637.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

