
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:48 04/04/2011

Input data from file "591-tomodel-phylip/chr5_11339.phylip" (7 taxa, 730 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2155.6000	4352.3848	0.4247	0.4247
GTRI	20	-2155.8889	4352.9626	0.3181	0.7428
GTRIG	21	-2155.5845	4354.4740	0.1494	0.8922
HKYG	16	-2161.8595	4356.4819	0.0548	0.9470
HKYI	16	-2162.3236	4357.4103	0.0344	0.9814
HKYIG	17	-2161.8914	4358.6423	0.0186	1.0000
GTR	19	-2181.1914	4401.4532	0.0000	1.0000
HKY	15	-2187.2956	4405.2634	0.0000	1.0000
SYMG	17	-2197.9553	4430.7702	0.0000	1.0000
SYMIG	18	-2197.9484	4432.8587	0.0000	1.0000
SYMI	17	-2199.0722	4433.0039	0.0000	1.0000
K2PG	13	-2209.1209	4444.7502	0.0000	1.0000
K2PIG	14	-2209.1068	4446.8010	0.0000	1.0000
K2PI	13	-2210.1786	4446.8656	0.0000	1.0000
F81G	15	-2209.5606	4449.7935	0.0000	1.0000
F81I	15	-2210.1513	4450.9749	0.0000	1.0000
F81IG	16	-2209.5654	4451.8937	0.0000	1.0000
SYM	16	-2223.4761	4479.7152	0.0000	1.0000
K2P	12	-2234.4973	4493.4298	0.0000	1.0000
F81	14	-2233.5363	4495.6600	0.0000	1.0000
JC69G	12	-2247.4405	4519.3161	0.0000	1.0000
JC69I	12	-2250.1759	4524.7869	0.0000	1.0000
JC69IG	13	-2249.3092	4525.1269	0.0000	1.0000
JC69	11	-2273.2950	4568.9577	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2155.6000	4351.2001	0.4292	0.4292
GTRI	20	-2155.8889	4351.7779	0.3215	0.7507
GTRIG	21	-2155.5845	4353.1690	0.1604	0.9111
HKYG	16	-2161.8595	4355.7189	0.0448	0.9559
HKYI	16	-2162.3236	4356.6473	0.0282	0.9840
HKYIG	17	-2161.8914	4357.7828	0.0160	1.0000
GTR	19	-2181.1914	4400.3827	0.0000	1.0000
HKY	15	-2187.2956	4404.5912	0.0000	1.0000
SYMG	17	-2197.9553	4429.9106	0.0000	1.0000
SYMIG	18	-2197.9484	4431.8967	0.0000	1.0000
SYMI	17	-2199.0722	4432.1443	0.0000	1.0000
K2PG	13	-2209.1209	4444.2418	0.0000	1.0000
K2PIG	14	-2209.1068	4446.2135	0.0000	1.0000
K2PI	13	-2210.1786	4446.3572	0.0000	1.0000
F81G	15	-2209.5606	4449.1213	0.0000	1.0000
F81I	15	-2210.1513	4450.3026	0.0000	1.0000
F81IG	16	-2209.5654	4451.1308	0.0000	1.0000
SYM	16	-2223.4761	4478.9522	0.0000	1.0000
K2P	12	-2234.4973	4492.9947	0.0000	1.0000
F81	14	-2233.5363	4495.0726	0.0000	1.0000
JC69G	12	-2247.4405	4518.8810	0.0000	1.0000
JC69I	12	-2250.1759	4524.3518	0.0000	1.0000
JC69IG	13	-2249.3092	4524.6185	0.0000	1.0000
JC69	11	-2273.2950	4568.5901	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2161.8595	4429.2076	0.6001	0.6001
HKYI	16	-2162.3236	4430.1360	0.3773	0.9774
HKYIG	17	-2161.8914	4435.8645	0.0215	0.9989
GTRG	20	-2155.6000	4443.0610	0.0006	0.9995
GTRI	20	-2155.8889	4443.6388	0.0004	1.0000
GTRIG	21	-2155.5845	4449.6229	0.0000	1.0000
HKY	15	-2187.2956	4473.4868	0.0000	1.0000
GTR	19	-2181.1914	4487.6506	0.0000	1.0000
K2PG	13	-2209.1209	4503.9514	0.0000	1.0000
K2PI	13	-2210.1786	4506.0668	0.0000	1.0000
SYMG	17	-2197.9553	4507.9924	0.0000	1.0000
SYMI	17	-2199.0722	4510.2261	0.0000	1.0000
K2PIG	14	-2209.1068	4510.5162	0.0000	1.0000
SYMIG	18	-2197.9484	4514.5715	0.0000	1.0000
F81G	15	-2209.5606	4518.0169	0.0000	1.0000
F81I	15	-2210.1513	4519.1983	0.0000	1.0000
F81IG	16	-2209.5654	4524.6195	0.0000	1.0000
K2P	12	-2234.4973	4548.1112	0.0000	1.0000
SYM	16	-2223.4761	4552.4410	0.0000	1.0000
F81	14	-2233.5363	4559.3752	0.0000	1.0000
JC69G	12	-2247.4405	4573.9975	0.0000	1.0000
JC69I	12	-2250.1759	4579.4683	0.0000	1.0000
JC69IG	13	-2249.3092	4584.3281	0.0000	1.0000
JC69	11	-2273.2950	4619.1135	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11339.phylip = 1 - 730;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11339.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11339.phylip = 1 - 730;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11339.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11339.phylip = 1 - 730;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11339.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

