
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:47 04/04/2011

Input data from file "591-tomodel-phylip/chr5_11258.phylip" (7 taxa, 731 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2715.9927	5473.1684	0.7241	0.7241
GTRIG	21	-2715.9927	5475.2886	0.2508	0.9749
GTRI	20	-2719.4710	5480.1250	0.0223	0.9972
HKYG	16	-2726.1305	5485.0228	0.0019	0.9992
HKYIG	17	-2726.1382	5487.1348	0.0007	0.9998
HKYI	16	-2728.6858	5490.1335	0.0001	1.0000
SYMG	17	-2735.1580	5505.1743	0.0000	1.0000
SYMIG	18	-2735.1644	5507.2894	0.0000	1.0000
K2PG	13	-2741.6158	5509.7392	0.0000	1.0000
SYMI	17	-2738.3758	5511.6100	0.0000	1.0000
K2PIG	14	-2741.6295	5511.8456	0.0000	1.0000
K2PI	13	-2744.1435	5514.7946	0.0000	1.0000
GTR	19	-2749.5355	5538.1399	0.0000	1.0000
HKY	15	-2759.3083	5549.2880	0.0000	1.0000
SYM	16	-2768.9227	5570.6072	0.0000	1.0000
K2P	12	-2775.5225	5575.4795	0.0000	1.0000
F81G	15	-2775.6491	5581.9695	0.0000	1.0000
F81IG	16	-2775.6524	5584.0666	0.0000	1.0000
F81I	15	-2777.7779	5586.2272	0.0000	1.0000
JC69G	12	-2789.2383	5602.9112	0.0000	1.0000
JC69IG	13	-2789.2376	5604.9829	0.0000	1.0000
JC69I	12	-2791.5154	5607.4654	0.0000	1.0000
F81	14	-2807.0507	5642.6880	0.0000	1.0000
JC69	11	-2820.8972	5664.1616	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2715.9927	5471.9853	0.7133	0.7133
GTRIG	21	-2715.9927	5473.9854	0.2624	0.9758
GTRI	20	-2719.4710	5478.9419	0.0220	0.9978
HKYG	16	-2726.1305	5484.2609	0.0015	0.9993
HKYIG	17	-2726.1382	5486.2764	0.0006	0.9999
HKYI	16	-2728.6858	5489.3716	0.0001	1.0000
SYMG	17	-2735.1580	5504.3159	0.0000	1.0000
SYMIG	18	-2735.1644	5506.3287	0.0000	1.0000
K2PG	13	-2741.6158	5509.2315	0.0000	1.0000
SYMI	17	-2738.3758	5510.7517	0.0000	1.0000
K2PIG	14	-2741.6295	5511.2590	0.0000	1.0000
K2PI	13	-2744.1435	5514.2870	0.0000	1.0000
GTR	19	-2749.5355	5537.0710	0.0000	1.0000
HKY	15	-2759.3083	5548.6166	0.0000	1.0000
SYM	16	-2768.9227	5569.8453	0.0000	1.0000
K2P	12	-2775.5225	5575.0450	0.0000	1.0000
F81G	15	-2775.6491	5581.2982	0.0000	1.0000
F81IG	16	-2775.6524	5583.3047	0.0000	1.0000
F81I	15	-2777.7779	5585.5559	0.0000	1.0000
JC69G	12	-2789.2383	5602.4767	0.0000	1.0000
JC69IG	13	-2789.2376	5604.4752	0.0000	1.0000
JC69I	12	-2791.5154	5607.0309	0.0000	1.0000
F81	14	-2807.0507	5642.1014	0.0000	1.0000
JC69	11	-2820.8972	5663.7944	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2726.1305	5557.7716	0.8554	0.8554
HKYI	16	-2728.6858	5562.8822	0.0664	0.9218
GTRG	20	-2715.9927	5563.8736	0.0405	0.9623
HKYIG	17	-2726.1382	5564.3814	0.0314	0.9937
K2PG	13	-2741.6158	5568.9589	0.0032	0.9969
GTRIG	21	-2715.9927	5570.4681	0.0015	0.9984
GTRI	20	-2719.4710	5570.8302	0.0012	0.9996
K2PI	13	-2744.1435	5574.0143	0.0003	0.9999
K2PIG	14	-2741.6295	5575.5808	0.0001	1.0000
SYMG	17	-2735.1580	5582.4210	0.0000	1.0000
SYMI	17	-2738.3758	5588.8567	0.0000	1.0000
SYMIG	18	-2735.1644	5589.0281	0.0000	1.0000
HKY	15	-2759.3083	5617.5328	0.0000	1.0000
GTR	19	-2749.5355	5624.3648	0.0000	1.0000
K2P	12	-2775.5225	5630.1779	0.0000	1.0000
SYM	16	-2768.9227	5643.3559	0.0000	1.0000
F81G	15	-2775.6491	5650.2144	0.0000	1.0000
F81I	15	-2777.7779	5654.4721	0.0000	1.0000
F81IG	16	-2775.6524	5656.8153	0.0000	1.0000
JC69G	12	-2789.2383	5657.6096	0.0000	1.0000
JC69I	12	-2791.5154	5662.1638	0.0000	1.0000
JC69IG	13	-2789.2376	5664.2026	0.0000	1.0000
F81	14	-2807.0507	5706.4231	0.0000	1.0000
JC69	11	-2820.8972	5714.3329	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11258.phylip = 1 - 731;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11258.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11258.phylip = 1 - 731;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11258.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11258.phylip = 1 - 731;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11258.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

