
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:46 04/04/2011

Input data from file "591-tomodel-phylip/chr5_11245.phylip" (7 taxa, 814 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2602.8126	5246.6844	0.5498	0.5498
GTRI	20	-2603.7578	5248.5749	0.2137	0.7635
GTRIG	21	-2602.8381	5248.8429	0.1869	0.9504
HKYG	16	-2609.8726	5252.4277	0.0311	0.9815
HKYIG	17	-2609.8680	5254.5049	0.0110	0.9925
HKYI	16	-2611.2959	5255.2743	0.0075	1.0000
GTR	19	-2641.4872	5321.9315	0.0000	1.0000
HKY	15	-2648.1708	5326.9432	0.0000	1.0000
K2PG	13	-2654.2103	5334.8756	0.0000	1.0000
SYMG	17	-2650.3388	5335.4465	0.0000	1.0000
SYMI	17	-2650.8075	5336.3839	0.0000	1.0000
K2PI	13	-2655.2119	5336.8787	0.0000	1.0000
K2PIG	14	-2654.2289	5336.9835	0.0000	1.0000
SYMIG	18	-2650.3850	5337.6304	0.0000	1.0000
F81G	15	-2675.4580	5381.5174	0.0000	1.0000
F81I	15	-2675.7039	5382.0094	0.0000	1.0000
F81IG	16	-2675.4651	5383.6128	0.0000	1.0000
SYM	16	-2686.5397	5405.7619	0.0000	1.0000
K2P	12	-2690.9988	5406.3870	0.0000	1.0000
JC69G	12	-2709.7724	5443.9343	0.0000	1.0000
F81	14	-2707.7801	5444.0859	0.0000	1.0000
JC69I	12	-2710.1792	5444.7479	0.0000	1.0000
JC69IG	13	-2709.7724	5445.9999	0.0000	1.0000
JC69	11	-2742.0777	5506.4846	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2602.8126	5245.6251	0.5486	0.5486
GTRI	20	-2603.7578	5247.5156	0.2132	0.7618
GTRIG	21	-2602.8381	5247.6762	0.1967	0.9586
HKYG	16	-2609.8726	5251.7452	0.0257	0.9843
HKYIG	17	-2609.8680	5253.7360	0.0095	0.9938
HKYI	16	-2611.2959	5254.5917	0.0062	1.0000
GTR	19	-2641.4872	5320.9743	0.0000	1.0000
HKY	15	-2648.1708	5326.3417	0.0000	1.0000
K2PG	13	-2654.2103	5334.4206	0.0000	1.0000
SYMG	17	-2650.3388	5334.6776	0.0000	1.0000
SYMI	17	-2650.8075	5335.6150	0.0000	1.0000
K2PI	13	-2655.2119	5336.4237	0.0000	1.0000
K2PIG	14	-2654.2289	5336.4578	0.0000	1.0000
SYMIG	18	-2650.3850	5336.7700	0.0000	1.0000
F81G	15	-2675.4580	5380.9159	0.0000	1.0000
F81I	15	-2675.7039	5381.4079	0.0000	1.0000
F81IG	16	-2675.4651	5382.9303	0.0000	1.0000
SYM	16	-2686.5397	5405.0793	0.0000	1.0000
K2P	12	-2690.9988	5405.9975	0.0000	1.0000
JC69G	12	-2709.7724	5443.5448	0.0000	1.0000
F81	14	-2707.7801	5443.5602	0.0000	1.0000
JC69I	12	-2710.1792	5444.3584	0.0000	1.0000
JC69IG	13	-2709.7724	5445.5449	0.0000	1.0000
JC69	11	-2742.0777	5506.1555	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2609.8726	5326.9765	0.7821	0.7821
HKYI	16	-2611.2959	5329.8231	0.1884	0.9705
HKYIG	17	-2609.8680	5333.6693	0.0275	0.9980
GTRG	20	-2602.8126	5339.6643	0.0014	0.9994
GTRI	20	-2603.7578	5341.5548	0.0005	1.0000
GTRIG	21	-2602.8381	5346.4174	0.0000	1.0000
K2PG	13	-2654.2103	5395.5461	0.0000	1.0000
HKY	15	-2648.1708	5396.8711	0.0000	1.0000
K2PI	13	-2655.2119	5397.5492	0.0000	1.0000
K2PIG	14	-2654.2289	5402.2852	0.0000	1.0000
GTR	19	-2641.4872	5410.3116	0.0000	1.0000
SYMG	17	-2650.3388	5414.6109	0.0000	1.0000
SYMI	17	-2650.8075	5415.5483	0.0000	1.0000
SYMIG	18	-2650.3850	5421.4053	0.0000	1.0000
F81G	15	-2675.4580	5451.4453	0.0000	1.0000
F81I	15	-2675.7039	5451.9373	0.0000	1.0000
F81IG	16	-2675.4651	5458.1616	0.0000	1.0000
K2P	12	-2690.9988	5462.4210	0.0000	1.0000
SYM	16	-2686.5397	5480.3107	0.0000	1.0000
JC69G	12	-2709.7724	5499.9683	0.0000	1.0000
JC69I	12	-2710.1792	5500.7819	0.0000	1.0000
JC69IG	13	-2709.7724	5506.6703	0.0000	1.0000
F81	14	-2707.7801	5509.3876	0.0000	1.0000
JC69	11	-2742.0777	5557.8770	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11245.phylip = 1 - 814;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11245.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11245.phylip = 1 - 814;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11245.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11245.phylip = 1 - 814;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11245.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

