
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:45 04/04/2011

Input data from file "591-tomodel-phylip/chr5_11156.phylip" (7 taxa, 911 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3095.9636	6231.9273	0.5874	0.5874
GTRIG	21	-3095.9638	6233.9276	0.2161	0.8035
GTRI	20	-3097.1234	6234.2467	0.1842	0.9877
GTR	19	-3101.1052	6240.2104	0.0093	0.9971
HKYG	16	-3105.9692	6243.9384	0.0014	0.9985
HKYI	16	-3106.3920	6244.7840	0.0009	0.9995
HKYIG	17	-3105.9732	6245.9463	0.0005	1.0000
HKY	15	-3111.3513	6252.7026	0.0000	1.0000
SYMG	17	-3154.8150	6343.6299	0.0000	1.0000
SYMI	17	-3155.1813	6344.3625	0.0000	1.0000
SYMIG	18	-3154.8221	6345.6442	0.0000	1.0000
K2PI	13	-3162.4320	6350.8640	0.0000	1.0000
K2PG	13	-3162.4978	6350.9956	0.0000	1.0000
K2PIG	14	-3162.3924	6352.7847	0.0000	1.0000
SYM	16	-3160.6434	6353.2868	0.0000	1.0000
K2P	12	-3168.8776	6361.7553	0.0000	1.0000
F81G	15	-3185.4694	6400.9388	0.0000	1.0000
F81I	15	-3185.5375	6401.0749	0.0000	1.0000
F81IG	16	-3185.4565	6402.9129	0.0000	1.0000
F81	14	-3189.6367	6407.2734	0.0000	1.0000
JC69I	12	-3231.2089	6486.4178	0.0000	1.0000
JC69G	12	-3231.3682	6486.7365	0.0000	1.0000
JC69IG	13	-3231.2119	6488.4238	0.0000	1.0000
JC69	11	-3236.2657	6494.5314	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3105.9692	6320.9711	0.5354	0.5354
HKYI	16	-3106.3920	6321.8167	0.3508	0.8863
HKY	15	-3111.3513	6324.9207	0.0743	0.9606
HKYIG	17	-3105.9732	6327.7936	0.0177	0.9782
GTRG	20	-3095.9636	6328.2181	0.0143	0.9925
GTRI	20	-3097.1234	6330.5376	0.0045	0.9970
GTR	19	-3101.1052	6331.6867	0.0025	0.9995
GTRIG	21	-3095.9638	6335.0330	0.0005	1.0000
K2PI	13	-3162.4320	6413.4531	0.0000	1.0000
K2PG	13	-3162.4978	6413.5847	0.0000	1.0000
K2P	12	-3168.8776	6419.5298	0.0000	1.0000
K2PIG	14	-3162.3924	6420.1883	0.0000	1.0000
SYMG	17	-3154.8150	6425.4771	0.0000	1.0000
SYMI	17	-3155.1813	6426.2097	0.0000	1.0000
SYM	16	-3160.6434	6430.3195	0.0000	1.0000
SYMIG	18	-3154.8221	6432.3060	0.0000	1.0000
F81G	15	-3185.4694	6473.1570	0.0000	1.0000
F81I	15	-3185.5375	6473.2931	0.0000	1.0000
F81	14	-3189.6367	6474.6770	0.0000	1.0000
F81IG	16	-3185.4565	6479.9456	0.0000	1.0000
JC69I	12	-3231.2089	6544.1924	0.0000	1.0000
JC69G	12	-3231.3682	6544.5110	0.0000	1.0000
JC69	11	-3236.2657	6547.4914	0.0000	1.0000
JC69IG	13	-3231.2119	6551.0129	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11156.phylip = 1 - 911;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11156.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11156.phylip = 1 - 911;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11156.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_11156.phylip = 1 - 911;
 Partition Dummy = 1:591-tomodel-phylip/chr5_11156.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

