
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:43 04/04/2011

Input data from file "591-tomodel-phylip/chr5_10906.phylip" (7 taxa, 665 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1940.6603	3922.6249	0.5235	0.5235
GTRI	20	-1941.4070	3924.1183	0.2481	0.7715
GTRIG	21	-1940.4813	3924.3996	0.2155	0.9871
SYMG	17	-1948.7202	3932.3863	0.0040	0.9910
HKYG	16	-1950.2612	3933.3619	0.0024	0.9935
SYMI	17	-1949.2551	3933.4561	0.0023	0.9958
SYMIG	18	-1948.5300	3934.1188	0.0017	0.9975
HKYI	16	-1950.8107	3934.4609	0.0014	0.9989
HKYIG	17	-1950.0142	3934.9743	0.0011	1.0000
K2PG	13	-1959.1522	3944.8635	0.0000	1.0000
K2PI	13	-1959.5366	3945.6323	0.0000	1.0000
K2PIG	14	-1958.9063	3946.4588	0.0000	1.0000
F81G	15	-1971.8683	3974.4762	0.0000	1.0000
F81I	15	-1971.8875	3974.5146	0.0000	1.0000
F81IG	16	-1971.6432	3976.1260	0.0000	1.0000
JC69I	12	-1981.9576	3988.3936	0.0000	1.0000
JC69G	12	-1981.9741	3988.4268	0.0000	1.0000
GTR	19	-1974.9238	3989.0258	0.0000	1.0000
JC69IG	13	-1982.0245	3990.6081	0.0000	1.0000
SYM	16	-1983.5521	3999.9437	0.0000	1.0000
HKY	15	-1986.5902	4003.9201	0.0000	1.0000
K2P	12	-1996.2808	4017.0401	0.0000	1.0000
F81	14	-2008.4341	4045.5144	0.0000	1.0000
JC69	11	-2017.8683	4058.1408	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1940.6603	3921.3206	0.5170	0.5170
GTRI	20	-1941.4070	3922.8140	0.2450	0.7620
GTRIG	21	-1940.4813	3922.9625	0.2275	0.9894
SYMG	17	-1948.7202	3931.4404	0.0033	0.9927
SYMI	17	-1949.2551	3932.5102	0.0019	0.9946
HKYG	16	-1950.2612	3932.5224	0.0019	0.9965
SYMIG	18	-1948.5300	3933.0600	0.0015	0.9980
HKYI	16	-1950.8107	3933.6214	0.0011	0.9991
HKYIG	17	-1950.0142	3934.0284	0.0009	1.0000
K2PG	13	-1959.1522	3944.3044	0.0000	1.0000
K2PI	13	-1959.5366	3945.0732	0.0000	1.0000
K2PIG	14	-1958.9063	3945.8127	0.0000	1.0000
F81G	15	-1971.8683	3973.7366	0.0000	1.0000
F81I	15	-1971.8875	3973.7750	0.0000	1.0000
F81IG	16	-1971.6432	3975.2865	0.0000	1.0000
GTR	19	-1974.9238	3987.8475	0.0000	1.0000
JC69I	12	-1981.9576	3987.9151	0.0000	1.0000
JC69G	12	-1981.9741	3987.9483	0.0000	1.0000
JC69IG	13	-1982.0245	3990.0489	0.0000	1.0000
SYM	16	-1983.5521	3999.1042	0.0000	1.0000
HKY	15	-1986.5902	4003.1805	0.0000	1.0000
K2P	12	-1996.2808	4016.5616	0.0000	1.0000
F81	14	-2008.4341	4044.8682	0.0000	1.0000
JC69	11	-2017.8683	4057.7366	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-1959.1522	4002.8016	0.3896	0.3896
K2PI	13	-1959.5366	4003.5704	0.2653	0.6549
HKYG	16	-1950.2612	4004.5190	0.1651	0.8200
HKYI	16	-1950.8107	4005.6180	0.0953	0.9153
SYMG	17	-1948.7202	4007.9368	0.0299	0.9452
K2PIG	14	-1958.9063	4008.8097	0.0193	0.9645
SYMI	17	-1949.2551	4009.0066	0.0175	0.9820
HKYIG	17	-1950.0142	4010.5248	0.0082	0.9902
GTRG	20	-1940.6603	4011.3163	0.0055	0.9957
GTRI	20	-1941.4070	4012.8097	0.0026	0.9983
SYMIG	18	-1948.5300	4014.0561	0.0014	0.9997
GTRIG	21	-1940.4813	4017.4581	0.0003	1.0000
F81G	15	-1971.8683	4041.2334	0.0000	1.0000
F81I	15	-1971.8875	4041.2718	0.0000	1.0000
JC69I	12	-1981.9576	4041.9125	0.0000	1.0000
JC69G	12	-1981.9741	4041.9457	0.0000	1.0000
F81IG	16	-1971.6432	4047.2831	0.0000	1.0000
JC69IG	13	-1982.0245	4048.5462	0.0000	1.0000
K2P	12	-1996.2808	4070.5590	0.0000	1.0000
HKY	15	-1986.5902	4070.6773	0.0000	1.0000
SYM	16	-1983.5521	4071.1008	0.0000	1.0000
GTR	19	-1974.9238	4073.3435	0.0000	1.0000
JC69	11	-2017.8683	4107.2342	0.0000	1.0000
F81	14	-2008.4341	4107.8652	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10906.phylip = 1 - 665;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10906.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10906.phylip = 1 - 665;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10906.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10906.phylip = 1 - 665;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10906.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

