
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:43 04/04/2011

Input data from file "591-tomodel-phylip/chr5_10854.phylip" (7 taxa, 1181 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-4186.4728	8412.9455	0.3588	0.3588
HKYG	16	-4190.6677	8413.3355	0.2953	0.6541
GTRIG	21	-4186.4730	8414.9459	0.1320	0.7860
HKYIG	17	-4190.6679	8415.3358	0.1086	0.8946
HKYI	16	-4192.3813	8416.7627	0.0532	0.9479
GTRI	20	-4188.4021	8416.8043	0.0521	1.0000
HKY	15	-4201.2478	8432.4956	0.0000	1.0000
GTR	19	-4197.5242	8433.0484	0.0000	1.0000
K2PG	13	-4237.2388	8500.4776	0.0000	1.0000
K2PIG	14	-4237.2389	8502.4779	0.0000	1.0000
K2PI	13	-4238.8699	8503.7397	0.0000	1.0000
SYMG	17	-4235.5357	8505.0714	0.0000	1.0000
SYMIG	18	-4235.5358	8507.0716	0.0000	1.0000
SYMI	17	-4237.2047	8508.4095	0.0000	1.0000
K2P	12	-4247.9783	8519.9566	0.0000	1.0000
SYM	16	-4245.9688	8523.9375	0.0000	1.0000
F81G	15	-4304.8293	8639.6585	0.0000	1.0000
F81IG	16	-4304.8294	8641.6588	0.0000	1.0000
F81I	15	-4306.2643	8642.5286	0.0000	1.0000
F81	14	-4314.3535	8656.7070	0.0000	1.0000
JC69G	12	-4342.2453	8708.4906	0.0000	1.0000
JC69IG	13	-4342.2455	8710.4909	0.0000	1.0000
JC69I	12	-4343.6394	8711.2788	0.0000	1.0000
JC69	11	-4351.6329	8725.2658	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-4190.6677	8494.5213	0.8263	0.8263
HKYI	16	-4192.3813	8497.9485	0.1489	0.9752
HKYIG	17	-4190.6679	8501.5958	0.0240	0.9992
HKY	15	-4201.2478	8508.6074	0.0007	1.0000
GTRG	20	-4186.4728	8514.4279	0.0000	1.0000
GTRI	20	-4188.4021	8518.2866	0.0000	1.0000
GTRIG	21	-4186.4730	8521.5024	0.0000	1.0000
GTR	19	-4197.5242	8529.4566	0.0000	1.0000
K2PG	13	-4237.2388	8566.4411	0.0000	1.0000
K2PI	13	-4238.8699	8569.7032	0.0000	1.0000
K2PIG	14	-4237.2389	8573.5155	0.0000	1.0000
K2P	12	-4247.9783	8580.8460	0.0000	1.0000
SYMG	17	-4235.5357	8591.3313	0.0000	1.0000
SYMI	17	-4237.2047	8594.6694	0.0000	1.0000
SYMIG	18	-4235.5358	8598.4057	0.0000	1.0000
SYM	16	-4245.9688	8605.1234	0.0000	1.0000
F81G	15	-4304.8293	8715.7703	0.0000	1.0000
F81I	15	-4306.2643	8718.6404	0.0000	1.0000
F81IG	16	-4304.8294	8722.8447	0.0000	1.0000
F81	14	-4314.3535	8727.7446	0.0000	1.0000
JC69G	12	-4342.2453	8769.3800	0.0000	1.0000
JC69I	12	-4343.6394	8772.1682	0.0000	1.0000
JC69IG	13	-4342.2455	8776.4544	0.0000	1.0000
JC69	11	-4351.6329	8781.0811	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10854.phylip = 1 - 1181;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10854.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10854.phylip = 1 - 1181;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10854.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10854.phylip = 1 - 1181;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10854.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

