
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:42 04/04/2011

Input data from file "591-tomodel-phylip/chr5_10841.phylip" (7 taxa, 965 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: HKYI


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-3101.6010	6243.2020	0.5352	0.5352
GTRIG	21	-3101.5919	6245.1839	0.1987	0.7339
GTRG	20	-3102.8688	6245.7375	0.1506	0.8845
HKYI	16	-3107.6780	6247.3560	0.0671	0.9516
HKYIG	17	-3107.6743	6249.3485	0.0248	0.9764
HKYG	16	-3108.7209	6249.4418	0.0236	1.0000
GTR	19	-3135.3577	6308.7155	0.0000	1.0000
HKY	15	-3140.9904	6311.9808	0.0000	1.0000
K2PI	13	-3167.7001	6361.4002	0.0000	1.0000
SYMI	17	-3164.0188	6362.0376	0.0000	1.0000
K2PG	13	-3168.5945	6363.1890	0.0000	1.0000
K2PIG	14	-3167.7009	6363.4018	0.0000	1.0000
SYMIG	18	-3164.0234	6364.0468	0.0000	1.0000
SYMG	17	-3165.1046	6364.2091	0.0000	1.0000
F81I	15	-3190.2910	6410.5819	0.0000	1.0000
F81IG	16	-3190.2987	6412.5974	0.0000	1.0000
F81G	15	-3191.4138	6412.8276	0.0000	1.0000
K2P	12	-3204.3112	6432.6223	0.0000	1.0000
SYM	16	-3201.8371	6435.6742	0.0000	1.0000
F81	14	-3222.3639	6472.7279	0.0000	1.0000
JC69I	12	-3238.7294	6501.4587	0.0000	1.0000
JC69G	12	-3239.6018	6503.2036	0.0000	1.0000
JC69IG	13	-3238.7331	6503.4662	0.0000	1.0000
JC69	11	-3272.1588	6566.3176	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-3107.6780	6325.3101	0.7218	0.7218
HKYG	16	-3108.7209	6327.3959	0.2544	0.9762
HKYIG	17	-3107.6743	6332.1747	0.0233	0.9996
GTRI	20	-3101.6010	6340.6446	0.0003	0.9999
GTRG	20	-3102.8688	6343.1801	0.0001	1.0000
GTRIG	21	-3101.5919	6347.4986	0.0000	1.0000
HKY	15	-3140.9904	6385.0627	0.0000	1.0000
GTR	19	-3135.3577	6401.2859	0.0000	1.0000
K2PI	13	-3167.7001	6424.7378	0.0000	1.0000
K2PG	13	-3168.5945	6426.5266	0.0000	1.0000
K2PIG	14	-3167.7009	6431.6116	0.0000	1.0000
SYMI	17	-3164.0188	6444.8637	0.0000	1.0000
SYMG	17	-3165.1046	6447.0353	0.0000	1.0000
SYMIG	18	-3164.0234	6451.7451	0.0000	1.0000
F81I	15	-3190.2910	6483.6638	0.0000	1.0000
F81G	15	-3191.4138	6485.9095	0.0000	1.0000
F81IG	16	-3190.2987	6490.5515	0.0000	1.0000
K2P	12	-3204.3112	6491.0879	0.0000	1.0000
SYM	16	-3201.8371	6513.6283	0.0000	1.0000
F81	14	-3222.3639	6540.9377	0.0000	1.0000
JC69I	12	-3238.7294	6559.9243	0.0000	1.0000
JC69G	12	-3239.6018	6561.6691	0.0000	1.0000
JC69IG	13	-3238.7331	6566.8038	0.0000	1.0000
JC69	11	-3272.1588	6619.9110	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10841.phylip = 1 - 965;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10841.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10841.phylip = 1 - 965;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10841.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10841.phylip = 1 - 965;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10841.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

