
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:41 04/04/2011

Input data from file "591-tomodel-phylip/chr5_10587.phylip" (7 taxa, 1014 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2843.3325	5726.6650	0.3884	0.3884
GTRI	20	-2843.5725	5727.1450	0.3055	0.6939
GTRIG	21	-2843.3648	5728.7295	0.1384	0.8323
HKYG	16	-2849.0383	5730.0766	0.0705	0.9028
HKYI	16	-2849.3160	5730.6321	0.0534	0.9563
HKYIG	17	-2849.0383	5732.0765	0.0260	0.9822
GTR	19	-2847.5625	5733.1250	0.0154	0.9976
HKY	15	-2853.4172	5736.8343	0.0024	1.0000
K2PG	13	-2887.5211	5801.0422	0.0000	1.0000
K2PI	13	-2887.8290	5801.6581	0.0000	1.0000
K2PIG	14	-2887.5210	5803.0420	0.0000	1.0000
SYMG	17	-2885.0437	5804.0875	0.0000	1.0000
SYMI	17	-2885.2861	5804.5722	0.0000	1.0000
SYMIG	18	-2885.0528	5806.1056	0.0000	1.0000
K2P	12	-2892.8513	5809.7026	0.0000	1.0000
SYM	16	-2890.0491	5812.0982	0.0000	1.0000
F81G	15	-2902.1184	5834.2367	0.0000	1.0000
F81I	15	-2902.3461	5834.6923	0.0000	1.0000
F81IG	16	-2902.1493	5836.2987	0.0000	1.0000
F81	14	-2906.0655	5840.1310	0.0000	1.0000
JC69G	12	-2935.5314	5895.0629	0.0000	1.0000
JC69I	12	-2935.7874	5895.5749	0.0000	1.0000
JC69IG	13	-2935.5433	5897.0866	0.0000	1.0000
JC69	11	-2940.0351	5902.0703	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2849.0383	5808.8231	0.4569	0.4569
HKYI	16	-2849.3160	5809.3786	0.3461	0.8029
HKY	15	-2853.4172	5810.6592	0.1824	0.9853
HKYIG	17	-2849.0383	5815.7447	0.0143	0.9997
GTRG	20	-2843.3325	5825.0982	0.0001	0.9998
GTRI	20	-2843.5725	5825.5782	0.0001	0.9999
GTR	19	-2847.5625	5826.6365	0.0001	1.0000
GTRIG	21	-2843.3648	5832.0843	0.0000	1.0000
K2PG	13	-2887.5211	5865.0237	0.0000	1.0000
K2PI	13	-2887.8290	5865.6396	0.0000	1.0000
K2P	12	-2892.8513	5868.7625	0.0000	1.0000
K2PIG	14	-2887.5210	5871.9453	0.0000	1.0000
SYMG	17	-2885.0437	5887.7556	0.0000	1.0000
SYMI	17	-2885.2861	5888.2404	0.0000	1.0000
SYM	16	-2890.0491	5890.8448	0.0000	1.0000
SYMIG	18	-2885.0528	5894.6954	0.0000	1.0000
F81G	15	-2902.1184	5908.0616	0.0000	1.0000
F81I	15	-2902.3461	5908.5172	0.0000	1.0000
F81	14	-2906.0655	5909.0342	0.0000	1.0000
F81IG	16	-2902.1493	5915.0452	0.0000	1.0000
JC69G	12	-2935.5314	5954.1228	0.0000	1.0000
JC69I	12	-2935.7874	5954.6348	0.0000	1.0000
JC69	11	-2940.0351	5956.2085	0.0000	1.0000
JC69IG	13	-2935.5433	5961.0681	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10587.phylip = 1 - 1014;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10587.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10587.phylip = 1 - 1014;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10587.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10587.phylip = 1 - 1014;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10587.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

