
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:40 04/04/2011

Input data from file "591-tomodel-phylip/chr5_10353.phylip" (7 taxa, 1141 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3899.3623	7838.7247	0.7195	0.7195
GTRIG	21	-3899.3690	7840.7379	0.2630	0.9825
GTRI	20	-3903.0914	7846.1828	0.0173	0.9998
HKYG	16	-3911.6893	7855.3786	0.0002	0.9999
HKYIG	17	-3911.6922	7857.3844	0.0001	1.0000
HKYI	16	-3914.7082	7861.4163	0.0000	1.0000
SYMG	17	-3940.0459	7914.0917	0.0000	1.0000
SYMIG	18	-3940.0566	7916.1132	0.0000	1.0000
SYMI	17	-3942.5006	7919.0011	0.0000	1.0000
K2PG	13	-3946.6830	7919.3660	0.0000	1.0000
K2PIG	14	-3946.6963	7921.3925	0.0000	1.0000
K2PI	13	-3949.0965	7924.1930	0.0000	1.0000
GTR	19	-3946.9151	7931.8303	0.0000	1.0000
HKY	15	-3956.7670	7943.5340	0.0000	1.0000
SYM	16	-3984.2772	8000.5544	0.0000	1.0000
K2P	12	-3990.6127	8005.2253	0.0000	1.0000
F81G	15	-4029.5208	8089.0416	0.0000	1.0000
F81IG	16	-4029.5812	8091.1623	0.0000	1.0000
F81I	15	-4030.9221	8091.8441	0.0000	1.0000
JC69G	12	-4055.0894	8134.1787	0.0000	1.0000
JC69IG	13	-4055.1376	8136.2753	0.0000	1.0000
JC69I	12	-4056.4412	8136.8824	0.0000	1.0000
F81	14	-4068.7655	8165.5310	0.0000	1.0000
JC69	11	-4094.2237	8210.4474	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3911.6893	7936.0131	0.7930	0.7930
GTRG	20	-3899.3623	7939.5179	0.1375	0.9305
HKYI	16	-3914.7082	7942.0509	0.0387	0.9692
HKYIG	17	-3911.6922	7943.0586	0.0234	0.9927
GTRIG	21	-3899.3690	7946.5708	0.0040	0.9967
GTRI	20	-3903.0914	7946.9760	0.0033	1.0000
K2PG	13	-3946.6830	7984.8816	0.0000	1.0000
K2PI	13	-3949.0965	7989.7086	0.0000	1.0000
K2PIG	14	-3946.6963	7991.9478	0.0000	1.0000
SYMG	17	-3940.0459	7999.7659	0.0000	1.0000
SYMI	17	-3942.5006	8004.6754	0.0000	1.0000
SYMIG	18	-3940.0566	8006.8271	0.0000	1.0000
HKY	15	-3956.7670	8019.1289	0.0000	1.0000
GTR	19	-3946.9151	8027.5838	0.0000	1.0000
K2P	12	-3990.6127	8065.7012	0.0000	1.0000
SYM	16	-3984.2772	8081.1890	0.0000	1.0000
F81G	15	-4029.5208	8164.6365	0.0000	1.0000
F81I	15	-4030.9221	8167.4390	0.0000	1.0000
F81IG	16	-4029.5812	8171.7969	0.0000	1.0000
JC69G	12	-4055.0894	8194.6546	0.0000	1.0000
JC69I	12	-4056.4412	8197.3583	0.0000	1.0000
JC69IG	13	-4055.1376	8201.7909	0.0000	1.0000
F81	14	-4068.7655	8236.0863	0.0000	1.0000
JC69	11	-4094.2237	8265.8836	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10353.phylip = 1 - 1141;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10353.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10353.phylip = 1 - 1141;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10353.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10353.phylip = 1 - 1141;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10353.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

