
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:46 04/04/2011

Input data from file "591-tomodel-phylip/chr5_10180.phylip" (7 taxa, 714 characters)

Minimum AIC  model: SYMG
Minimum AICc model: K2PG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
K2PG	13	-2351.0976	4728.7152	0.2466	0.2466
SYMG	17	-2346.9234	4728.7261	0.2452	0.4918
SYMI	17	-2347.8497	4730.5788	0.0971	0.5890
K2PIG	14	-2351.0992	4730.7992	0.0870	0.6759
SYMIG	18	-2346.9314	4730.8471	0.0849	0.7609
K2PI	13	-2352.3436	4731.2073	0.0709	0.8318
GTRG	20	-2345.1256	4731.4632	0.0624	0.8942
HKYG	16	-2349.8888	4732.5580	0.0361	0.9303
GTRI	20	-2346.0132	4733.2384	0.0257	0.9560
GTRIG	21	-2345.1546	4733.6445	0.0210	0.9770
HKYIG	17	-2349.8981	4734.6756	0.0125	0.9895
HKYI	16	-2351.1224	4735.0253	0.0105	1.0000
K2P	12	-2365.5147	4755.4745	0.0000	1.0000
SYM	16	-2362.1403	4757.0610	0.0000	1.0000
HKY	15	-2364.4921	4759.6719	0.0000	1.0000
GTR	19	-2360.9655	4761.0262	0.0000	1.0000
JC69G	12	-2407.6905	4839.8261	0.0000	1.0000
JC69I	12	-2408.6106	4841.6662	0.0000	1.0000
JC69IG	13	-2407.6929	4841.9057	0.0000	1.0000
F81G	15	-2407.1147	4844.9172	0.0000	1.0000
F81I	15	-2408.0738	4846.8352	0.0000	1.0000
F81IG	16	-2407.1148	4847.0100	0.0000	1.0000
JC69	11	-2419.0212	4860.4185	0.0000	1.0000
F81	14	-2418.4632	4865.5272	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
SYMG	17	-2346.9234	4727.8468	0.2554	0.2554
K2PG	13	-2351.0976	4728.1952	0.2146	0.4700
SYMI	17	-2347.8497	4729.6995	0.1012	0.5712
SYMIG	18	-2346.9314	4729.8629	0.0932	0.6644
K2PIG	14	-2351.0992	4730.1984	0.0788	0.7432
GTRG	20	-2345.1256	4730.2511	0.0768	0.8200
K2PI	13	-2352.3436	4730.6873	0.0617	0.8817
HKYG	16	-2349.8888	4731.7776	0.0358	0.9175
GTRI	20	-2346.0132	4732.0263	0.0316	0.9491
GTRIG	21	-2345.1546	4732.3092	0.0274	0.9765
HKYIG	17	-2349.8981	4733.7962	0.0130	0.9896
HKYI	16	-2351.1224	4734.2448	0.0104	1.0000
K2P	12	-2365.5147	4755.0294	0.0000	1.0000
SYM	16	-2362.1403	4756.2805	0.0000	1.0000
HKY	15	-2364.4921	4758.9842	0.0000	1.0000
GTR	19	-2360.9655	4759.9311	0.0000	1.0000
JC69G	12	-2407.6905	4839.3811	0.0000	1.0000
JC69I	12	-2408.6106	4841.2212	0.0000	1.0000
JC69IG	13	-2407.6929	4841.3857	0.0000	1.0000
F81G	15	-2407.1147	4844.2295	0.0000	1.0000
F81I	15	-2408.0738	4846.1476	0.0000	1.0000
F81IG	16	-2407.1148	4846.2295	0.0000	1.0000
JC69	11	-2419.0212	4860.0425	0.0000	1.0000
F81	14	-2418.4632	4864.9264	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-2351.0976	4787.6167	0.7545	0.7545
K2PI	13	-2352.3436	4790.1087	0.2170	0.9715
K2PIG	14	-2351.0992	4794.1907	0.0282	0.9997
HKYG	16	-2349.8888	4804.9117	0.0001	0.9998
SYMG	17	-2346.9234	4805.5518	0.0001	0.9999
HKYI	16	-2351.1224	4807.3790	0.0000	0.9999
SYMI	17	-2347.8497	4807.4045	0.0000	1.0000
K2P	12	-2365.5147	4809.8800	0.0000	1.0000
HKYIG	17	-2349.8981	4811.5013	0.0000	1.0000
SYMIG	18	-2346.9314	4812.1388	0.0000	1.0000
GTRG	20	-2345.1256	4821.6688	0.0000	1.0000
GTRI	20	-2346.0132	4823.4440	0.0000	1.0000
HKY	15	-2364.4921	4827.5475	0.0000	1.0000
GTRIG	21	-2345.1546	4828.2978	0.0000	1.0000
SYM	16	-2362.1403	4829.4147	0.0000	1.0000
GTR	19	-2360.9655	4846.7779	0.0000	1.0000
JC69G	12	-2407.6905	4894.2317	0.0000	1.0000
JC69I	12	-2408.6106	4896.0718	0.0000	1.0000
JC69IG	13	-2407.6929	4900.8072	0.0000	1.0000
JC69	11	-2419.0212	4910.3222	0.0000	1.0000
F81G	15	-2407.1147	4912.7927	0.0000	1.0000
F81I	15	-2408.0738	4914.7108	0.0000	1.0000
F81IG	16	-2407.1148	4919.3636	0.0000	1.0000
F81	14	-2418.4632	4928.9187	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (SYMG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10180.phylip = 1 - 714;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10180.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Fixed(Equal);
END;


[Mrbayes block for the best AICc model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10180.phylip = 1 - 714;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10180.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10180.phylip = 1 - 714;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10180.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

