
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:45 04/04/2011

Input data from file "591-tomodel-phylip/chr5_10120.phylip" (7 taxa, 876 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2270.6478	4581.2956	0.5360	0.5360
GTRI	20	-2271.4574	4582.9148	0.2385	0.7745
GTRIG	21	-2270.5704	4583.1408	0.2131	0.9876
HKYG	16	-2278.9910	4589.9819	0.0070	0.9946
HKYIG	17	-2278.9059	4591.8118	0.0028	0.9974
HKYI	16	-2279.9612	4591.9224	0.0026	1.0000
GTR	19	-2286.5093	4611.0187	0.0000	1.0000
HKY	15	-2293.4435	4616.8871	0.0000	1.0000
SYMG	17	-2315.0237	4664.0473	0.0000	1.0000
K2PG	13	-2319.3396	4664.6792	0.0000	1.0000
SYMIG	18	-2314.9203	4665.8405	0.0000	1.0000
SYMI	17	-2316.0167	4666.0333	0.0000	1.0000
K2PIG	14	-2319.2500	4666.4999	0.0000	1.0000
K2PI	13	-2320.3574	4666.7148	0.0000	1.0000
SYM	16	-2329.0805	4690.1610	0.0000	1.0000
K2P	12	-2333.1145	4690.2289	0.0000	1.0000
F81G	15	-2353.5342	4737.0684	0.0000	1.0000
F81I	15	-2354.0042	4738.0084	0.0000	1.0000
F81IG	16	-2353.5266	4739.0533	0.0000	1.0000
F81	14	-2364.9131	4757.8263	0.0000	1.0000
JC69G	12	-2386.5655	4797.1310	0.0000	1.0000
JC69I	12	-2387.3117	4798.6233	0.0000	1.0000
JC69IG	13	-2386.5360	4799.0720	0.0000	1.0000
JC69	11	-2398.2593	4818.5186	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2278.9910	4666.3878	0.7023	0.7023
HKYI	16	-2279.9612	4668.3283	0.2662	0.9685
HKYIG	17	-2278.9059	4672.9931	0.0258	0.9943
GTRG	20	-2270.6478	4676.8029	0.0038	0.9981
GTRI	20	-2271.4574	4678.4222	0.0017	0.9998
GTRIG	21	-2270.5704	4683.4235	0.0001	1.0000
HKY	15	-2293.4435	4688.5176	0.0000	1.0000
GTR	19	-2286.5093	4701.7506	0.0000	1.0000
K2PG	13	-2319.3396	4726.7590	0.0000	1.0000
K2PI	13	-2320.3574	4728.7946	0.0000	1.0000
K2PIG	14	-2319.2500	4733.3550	0.0000	1.0000
SYMG	17	-2315.0237	4745.2285	0.0000	1.0000
SYMI	17	-2316.0167	4747.2145	0.0000	1.0000
K2P	12	-2333.1145	4747.5333	0.0000	1.0000
SYMIG	18	-2314.9203	4751.7971	0.0000	1.0000
SYM	16	-2329.0805	4766.5668	0.0000	1.0000
F81G	15	-2353.5342	4808.6989	0.0000	1.0000
F81I	15	-2354.0042	4809.6389	0.0000	1.0000
F81IG	16	-2353.5266	4815.4591	0.0000	1.0000
F81	14	-2364.9131	4824.6814	0.0000	1.0000
JC69G	12	-2386.5655	4854.4354	0.0000	1.0000
JC69I	12	-2387.3117	4855.9277	0.0000	1.0000
JC69IG	13	-2386.5360	4861.1518	0.0000	1.0000
JC69	11	-2398.2593	4871.0476	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10120.phylip = 1 - 876;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10120.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10120.phylip = 1 - 876;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10120.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10120.phylip = 1 - 876;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10120.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

