
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:44 04/04/2011

Input data from file "591-tomodel-phylip/chr5_10047.phylip" (7 taxa, 943 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2709.1582	5458.3164	0.5424	0.5424
GTRIG	21	-2708.4741	5458.9482	0.3955	0.9378
GTRI	20	-2712.2576	5464.5151	0.0244	0.9623
HKYG	16	-2716.3682	5464.7365	0.0219	0.9842
HKYIG	17	-2715.7778	5465.5556	0.0145	0.9987
HKYI	16	-2719.2066	5470.4133	0.0013	1.0000
K2PG	13	-2727.6050	5481.2100	0.0000	1.0000
SYMG	17	-2723.6493	5481.2985	0.0000	1.0000
K2PIG	14	-2727.0152	5482.0303	0.0000	1.0000
SYMIG	18	-2723.0179	5482.0358	0.0000	1.0000
K2PI	13	-2730.4509	5486.9017	0.0000	1.0000
SYMI	17	-2726.6572	5487.3143	0.0000	1.0000
GTR	19	-2750.5641	5539.1282	0.0000	1.0000
HKY	15	-2756.5750	5543.1500	0.0000	1.0000
K2P	12	-2767.2943	5558.5886	0.0000	1.0000
SYM	16	-2763.6002	5559.2003	0.0000	1.0000
F81G	15	-2773.6164	5577.2328	0.0000	1.0000
F81IG	16	-2773.0406	5578.0812	0.0000	1.0000
F81I	15	-2776.7243	5583.4485	0.0000	1.0000
JC69G	12	-2782.7429	5589.4857	0.0000	1.0000
JC69IG	13	-2782.1551	5590.3103	0.0000	1.0000
JC69I	12	-2785.8404	5595.6809	0.0000	1.0000
F81	14	-2810.9660	5649.9321	0.0000	1.0000
JC69	11	-2820.2488	5662.4977	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2716.3682	5542.3216	0.6471	0.6471
K2PG	13	-2727.6050	5544.2478	0.2470	0.8941
HKYIG	17	-2715.7778	5547.9898	0.0380	0.9322
HKYI	16	-2719.2066	5547.9983	0.0379	0.9700
K2PIG	14	-2727.0152	5549.9173	0.0145	0.9845
K2PI	13	-2730.4509	5549.9396	0.0143	0.9989
GTRG	20	-2709.1582	5555.2977	0.0010	0.9999
GTRIG	21	-2708.4741	5560.7786	0.0001	0.9999
GTRI	20	-2712.2576	5561.4964	0.0000	1.0000
SYMG	17	-2723.6493	5563.7326	0.0000	1.0000
SYMIG	18	-2723.0179	5569.3190	0.0000	1.0000
SYMI	17	-2726.6572	5569.7484	0.0000	1.0000
HKY	15	-2756.5750	5615.8860	0.0000	1.0000
K2P	12	-2767.2943	5616.7774	0.0000	1.0000
GTR	19	-2750.5641	5631.2604	0.0000	1.0000
SYM	16	-2763.6002	5636.7854	0.0000	1.0000
JC69G	12	-2782.7429	5647.6745	0.0000	1.0000
F81G	15	-2773.6164	5649.9688	0.0000	1.0000
JC69IG	13	-2782.1551	5653.3481	0.0000	1.0000
JC69I	12	-2785.8404	5653.8697	0.0000	1.0000
F81IG	16	-2773.0406	5655.6663	0.0000	1.0000
F81I	15	-2776.7243	5656.1845	0.0000	1.0000
JC69	11	-2820.2488	5715.8374	0.0000	1.0000
F81	14	-2810.9660	5717.8190	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10047.phylip = 1 - 943;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10047.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10047.phylip = 1 - 943;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10047.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr5_10047.phylip = 1 - 943;
 Partition Dummy = 1:591-tomodel-phylip/chr5_10047.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

