
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:43 04/04/2011

Input data from file "591-tomodel-phylip/chr4_9603.phylip" (7 taxa, 591 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYG	16	-1696.3211	3425.5900	0.4365	0.4365
HKYIG	17	-1696.1336	3427.3353	0.1824	0.6189
GTRG	20	-1693.0875	3427.6487	0.1559	0.7748
HKYI	16	-1697.6038	3428.1554	0.1210	0.8959
GTRIG	21	-1692.9225	3429.4688	0.0628	0.9586
GTRI	20	-1694.4154	3430.3045	0.0413	1.0000
SYMG	17	-1706.1497	3447.3675	0.0000	1.0000
K2PG	13	-1710.9032	3448.4372	0.0000	1.0000
SYMIG	18	-1706.0098	3449.2154	0.0000	1.0000
SYMI	17	-1707.3211	3449.7102	0.0000	1.0000
K2PIG	14	-1710.7529	3450.2349	0.0000	1.0000
K2PI	13	-1712.0229	3450.6766	0.0000	1.0000
HKY	15	-1717.4813	3465.7973	0.0000	1.0000
GTR	19	-1713.7628	3466.8565	0.0000	1.0000
SYM	16	-1726.6055	3486.1588	0.0000	1.0000
K2P	12	-1731.6558	3487.8513	0.0000	1.0000
F81G	15	-1737.0939	3505.0227	0.0000	1.0000
F81IG	16	-1737.0112	3506.9700	0.0000	1.0000
F81I	15	-1738.2267	3507.2882	0.0000	1.0000
JC69G	12	-1750.0128	3524.5654	0.0000	1.0000
JC69IG	13	-1749.9361	3526.5030	0.0000	1.0000
JC69I	12	-1751.1396	3526.8191	0.0000	1.0000
F81	14	-1756.6965	3542.1221	0.0000	1.0000
JC69	11	-1768.9760	3560.4079	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-1696.3211	3424.6423	0.3983	0.3983
GTRG	20	-1693.0875	3426.1750	0.1851	0.5834
HKYIG	17	-1696.1336	3426.2673	0.1768	0.7602
HKYI	16	-1697.6038	3427.2076	0.1105	0.8706
GTRIG	21	-1692.9225	3427.8449	0.0803	0.9509
GTRI	20	-1694.4154	3428.8308	0.0491	1.0000
SYMG	17	-1706.1497	3446.2994	0.0000	1.0000
K2PG	13	-1710.9032	3447.8063	0.0000	1.0000
SYMIG	18	-1706.0098	3448.0196	0.0000	1.0000
SYMI	17	-1707.3211	3448.6422	0.0000	1.0000
K2PIG	14	-1710.7529	3449.5057	0.0000	1.0000
K2PI	13	-1712.0229	3450.0457	0.0000	1.0000
HKY	15	-1717.4813	3464.9625	0.0000	1.0000
GTR	19	-1713.7628	3465.5255	0.0000	1.0000
SYM	16	-1726.6055	3485.2111	0.0000	1.0000
K2P	12	-1731.6558	3487.3115	0.0000	1.0000
F81G	15	-1737.0939	3504.1879	0.0000	1.0000
F81IG	16	-1737.0112	3506.0223	0.0000	1.0000
F81I	15	-1738.2267	3506.4535	0.0000	1.0000
JC69G	12	-1750.0128	3524.0256	0.0000	1.0000
JC69IG	13	-1749.9361	3525.8721	0.0000	1.0000
JC69I	12	-1751.1396	3526.2793	0.0000	1.0000
F81	14	-1756.6965	3541.3930	0.0000	1.0000
JC69	11	-1768.9760	3559.9519	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1696.3211	3494.7513	0.7484	0.7484
HKYI	16	-1697.6038	3497.3167	0.2075	0.9559
HKYIG	17	-1696.1336	3500.7582	0.0371	0.9931
K2PG	13	-1710.9032	3504.7699	0.0050	0.9981
K2PI	13	-1712.0229	3507.0093	0.0016	0.9997
K2PIG	14	-1710.7529	3510.8511	0.0002	0.9999
GTRG	20	-1693.0875	3513.8114	0.0001	1.0000
GTRI	20	-1694.4154	3516.4671	0.0000	1.0000
GTRIG	21	-1692.9225	3519.8631	0.0000	1.0000
SYMG	17	-1706.1497	3520.7903	0.0000	1.0000
SYMI	17	-1707.3211	3523.1330	0.0000	1.0000
SYMIG	18	-1706.0098	3526.8922	0.0000	1.0000
HKY	15	-1717.4813	3530.6897	0.0000	1.0000
K2P	12	-1731.6558	3539.8933	0.0000	1.0000
GTR	19	-1713.7628	3548.7800	0.0000	1.0000
SYM	16	-1726.6055	3555.3201	0.0000	1.0000
F81G	15	-1737.0939	3569.9151	0.0000	1.0000
F81I	15	-1738.2267	3572.1807	0.0000	1.0000
F81IG	16	-1737.0112	3576.1314	0.0000	1.0000
JC69G	12	-1750.0128	3576.6074	0.0000	1.0000
JC69I	12	-1751.1396	3578.8611	0.0000	1.0000
JC69IG	13	-1749.9361	3582.8357	0.0000	1.0000
F81	14	-1756.6965	3602.7384	0.0000	1.0000
JC69	11	-1768.9760	3608.1519	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_9603.phylip = 1 - 591;
 Partition Dummy = 1:591-tomodel-phylip/chr4_9603.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_9603.phylip = 1 - 591;
 Partition Dummy = 1:591-tomodel-phylip/chr4_9603.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_9603.phylip = 1 - 591;
 Partition Dummy = 1:591-tomodel-phylip/chr4_9603.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

