
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:42 04/04/2011

Input data from file "591-tomodel-phylip/chr4_7570.phylip" (7 taxa, 659 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: HKYI


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRI	20	-1405.1686	2851.6537	0.4320	0.4320
GTRG	20	-1405.9335	2853.1835	0.2010	0.6330
GTRIG	21	-1405.1082	2853.6669	0.1579	0.7908
HKYI	16	-1410.5572	2853.9618	0.1362	0.9271
HKYIG	17	-1410.5570	2856.0687	0.0475	0.9746
HKYG	16	-1412.2361	2857.3196	0.0254	1.0000
SYMI	17	-1419.0290	2873.0127	0.0000	1.0000
SYMG	17	-1419.4908	2873.9363	0.0000	1.0000
SYMIG	18	-1418.9113	2874.8913	0.0000	1.0000
K2PI	13	-1427.1690	2880.9023	0.0000	1.0000
K2PIG	14	-1427.1687	2882.9895	0.0000	1.0000
K2PG	13	-1428.8258	2884.2159	0.0000	1.0000
F81I	15	-1427.3378	2885.4222	0.0000	1.0000
F81IG	16	-1427.3376	2887.5225	0.0000	1.0000
F81G	15	-1429.3122	2889.3710	0.0000	1.0000
GTR	19	-1430.0906	2899.3705	0.0000	1.0000
HKY	15	-1437.9152	2906.5770	0.0000	1.0000
JC69I	12	-1445.3217	2915.1265	0.0000	1.0000
JC69IG	13	-1445.3215	2917.2074	0.0000	1.0000
JC69G	12	-1446.8597	2918.2024	0.0000	1.0000
SYM	16	-1442.7519	2918.3512	0.0000	1.0000
K2P	12	-1454.3818	2933.2467	0.0000	1.0000
F81	14	-1459.5334	2947.7189	0.0000	1.0000
JC69	11	-1476.8188	2976.0456	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-1405.1686	2850.3371	0.4457	0.4457
GTRG	20	-1405.9335	2851.8669	0.2074	0.6530
GTRIG	21	-1405.1082	2852.2164	0.1741	0.8272
HKYI	16	-1410.5572	2853.1144	0.1112	0.9383
HKYIG	17	-1410.5570	2855.1139	0.0409	0.9792
HKYG	16	-1412.2361	2856.4723	0.0207	1.0000
SYMI	17	-1419.0290	2872.0580	0.0000	1.0000
SYMG	17	-1419.4908	2872.9815	0.0000	1.0000
SYMIG	18	-1418.9113	2873.8225	0.0000	1.0000
K2PI	13	-1427.1690	2880.3380	0.0000	1.0000
K2PIG	14	-1427.1687	2882.3374	0.0000	1.0000
K2PG	13	-1428.8258	2883.6516	0.0000	1.0000
F81I	15	-1427.3378	2884.6757	0.0000	1.0000
F81IG	16	-1427.3376	2886.6751	0.0000	1.0000
F81G	15	-1429.3122	2888.6245	0.0000	1.0000
GTR	19	-1430.0906	2898.1812	0.0000	1.0000
HKY	15	-1437.9152	2905.8305	0.0000	1.0000
JC69I	12	-1445.3217	2914.6435	0.0000	1.0000
JC69IG	13	-1445.3215	2916.6431	0.0000	1.0000
SYM	16	-1442.7519	2917.5038	0.0000	1.0000
JC69G	12	-1446.8597	2917.7194	0.0000	1.0000
K2P	12	-1454.3818	2932.7637	0.0000	1.0000
F81	14	-1459.5334	2947.0667	0.0000	1.0000
JC69	11	-1476.8188	2975.6376	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-1410.5572	2924.9660	0.8146	0.8146
HKYG	16	-1412.2361	2928.3238	0.1520	0.9666
HKYIG	17	-1410.5570	2931.4562	0.0317	0.9983
K2PI	13	-1427.1690	2938.7174	0.0008	0.9992
GTRI	20	-1405.1686	2940.1516	0.0004	0.9996
GTRG	20	-1405.9335	2941.6814	0.0002	0.9998
K2PG	13	-1428.8258	2942.0310	0.0002	0.9999
K2PIG	14	-1427.1687	2945.2075	0.0000	1.0000
GTRIG	21	-1405.1082	2946.5216	0.0000	1.0000
SYMI	17	-1419.0290	2948.4003	0.0000	1.0000
SYMG	17	-1419.4908	2949.3238	0.0000	1.0000
F81I	15	-1427.3378	2952.0366	0.0000	1.0000
SYMIG	18	-1418.9113	2954.6555	0.0000	1.0000
F81G	15	-1429.3122	2955.9854	0.0000	1.0000
F81IG	16	-1427.3376	2958.5267	0.0000	1.0000
JC69I	12	-1445.3217	2968.5322	0.0000	1.0000
JC69G	12	-1446.8597	2971.6081	0.0000	1.0000
HKY	15	-1437.9152	2973.1913	0.0000	1.0000
JC69IG	13	-1445.3215	2975.0225	0.0000	1.0000
GTR	19	-1430.0906	2983.5049	0.0000	1.0000
K2P	12	-1454.3818	2986.6524	0.0000	1.0000
SYM	16	-1442.7519	2989.3554	0.0000	1.0000
F81	14	-1459.5334	3009.9369	0.0000	1.0000
JC69	11	-1476.8188	3025.0355	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_7570.phylip = 1 - 659;
 Partition Dummy = 1:591-tomodel-phylip/chr4_7570.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_7570.phylip = 1 - 659;
 Partition Dummy = 1:591-tomodel-phylip/chr4_7570.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_7570.phylip = 1 - 659;
 Partition Dummy = 1:591-tomodel-phylip/chr4_7570.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

