
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:41 04/04/2011

Input data from file "591-tomodel-phylip/chr4_7281.phylip" (7 taxa, 849 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-2775.2761	5590.5521	0.3854	0.3854
GTRG	20	-2775.4968	5590.9935	0.3091	0.6945
GTRIG	21	-2774.9696	5591.9391	0.1926	0.8872
HKYG	16	-2781.2576	5594.5152	0.0531	0.9403
HKYI	16	-2781.6248	5595.2496	0.0368	0.9771
HKYIG	17	-2781.0989	5596.1978	0.0229	1.0000
GTR	19	-2807.9283	5653.8566	0.0000	1.0000
HKY	15	-2812.7702	5655.5405	0.0000	1.0000
F81I	15	-2826.0683	5682.1366	0.0000	1.0000
F81G	15	-2826.2497	5682.4995	0.0000	1.0000
F81IG	16	-2825.9475	5683.8949	0.0000	1.0000
K2PG	13	-2831.1688	5688.3376	0.0000	1.0000
K2PI	13	-2831.8422	5689.6844	0.0000	1.0000
K2PIG	14	-2831.1615	5690.3231	0.0000	1.0000
SYMG	17	-2829.3471	5692.6942	0.0000	1.0000
SYMI	17	-2830.0962	5694.1924	0.0000	1.0000
SYMIG	18	-2829.3480	5694.6959	0.0000	1.0000
F81	14	-2855.2986	5738.5971	0.0000	1.0000
K2P	12	-2862.6748	5749.3495	0.0000	1.0000
SYM	16	-2861.6907	5755.3813	0.0000	1.0000
JC69G	12	-2867.5994	5759.1989	0.0000	1.0000
JC69I	12	-2867.7435	5759.4870	0.0000	1.0000
JC69IG	13	-2867.4652	5760.9303	0.0000	1.0000
JC69	11	-2897.0337	5816.0674	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2781.2576	5670.4202	0.5767	0.5767
HKYI	16	-2781.6248	5671.1546	0.3995	0.9762
HKYIG	17	-2781.0989	5676.8468	0.0232	0.9994
GTRI	20	-2775.2761	5685.4333	0.0003	0.9997
GTRG	20	-2775.4968	5685.8747	0.0003	1.0000
GTRIG	21	-2774.9696	5691.5644	0.0000	1.0000
HKY	15	-2812.7702	5726.7014	0.0000	1.0000
GTR	19	-2807.9283	5743.9937	0.0000	1.0000
K2PG	13	-2831.1688	5750.0104	0.0000	1.0000
K2PI	13	-2831.8422	5751.3572	0.0000	1.0000
F81I	15	-2826.0683	5753.2975	0.0000	1.0000
F81G	15	-2826.2497	5753.6604	0.0000	1.0000
K2PIG	14	-2831.1615	5756.7399	0.0000	1.0000
F81IG	16	-2825.9475	5759.7999	0.0000	1.0000
SYMG	17	-2829.3471	5773.3432	0.0000	1.0000
SYMI	17	-2830.0962	5774.8414	0.0000	1.0000
SYMIG	18	-2829.3480	5780.0890	0.0000	1.0000
F81	14	-2855.2986	5805.0140	0.0000	1.0000
K2P	12	-2862.6748	5806.2782	0.0000	1.0000
JC69G	12	-2867.5994	5816.1276	0.0000	1.0000
JC69I	12	-2867.7435	5816.4157	0.0000	1.0000
JC69IG	13	-2867.4652	5822.6031	0.0000	1.0000
SYM	16	-2861.6907	5831.2863	0.0000	1.0000
JC69	11	-2897.0337	5868.2520	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_7281.phylip = 1 - 849;
 Partition Dummy = 1:591-tomodel-phylip/chr4_7281.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_7281.phylip = 1 - 849;
 Partition Dummy = 1:591-tomodel-phylip/chr4_7281.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_7281.phylip = 1 - 849;
 Partition Dummy = 1:591-tomodel-phylip/chr4_7281.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

