
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:46 04/04/2011

Input data from file "591-tomodel-phylip/chr4_16026.phylip" (7 taxa, 928 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3186.3036	6412.6073	0.6528	0.6528
GTRIG	21	-3186.2658	6414.5316	0.2494	0.9022
GTRI	20	-3188.2017	6416.4033	0.0978	1.0000
HKYG	16	-3202.4870	6436.9740	0.0000	1.0000
HKYIG	17	-3202.4518	6438.9037	0.0000	1.0000
HKYI	16	-3203.9763	6439.9526	0.0000	1.0000
F81G	15	-3227.1497	6484.2993	0.0000	1.0000
F81IG	16	-3227.1603	6486.3206	0.0000	1.0000
F81I	15	-3229.4067	6488.8134	0.0000	1.0000
GTR	19	-3231.2198	6500.4396	0.0000	1.0000
SYMG	17	-3237.2190	6508.4380	0.0000	1.0000
SYMIG	18	-3237.1894	6510.3787	0.0000	1.0000
SYMI	17	-3239.3061	6512.6122	0.0000	1.0000
HKY	15	-3243.9653	6517.9306	0.0000	1.0000
K2PG	13	-3253.4203	6532.8405	0.0000	1.0000
K2PIG	14	-3253.4195	6534.8391	0.0000	1.0000
K2PI	13	-3255.1163	6536.2326	0.0000	1.0000
F81	14	-3268.6121	6565.2243	0.0000	1.0000
JC69G	12	-3277.7897	6579.5795	0.0000	1.0000
JC69IG	13	-3277.7906	6581.5813	0.0000	1.0000
JC69I	12	-3279.5875	6583.1750	0.0000	1.0000
SYM	16	-3279.6484	6591.2967	0.0000	1.0000
K2P	12	-3294.5305	6613.0610	0.0000	1.0000
JC69	11	-3318.9873	6659.9746	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-3186.3036	6509.2679	0.7779	0.7779
GTRI	20	-3188.2017	6513.0640	0.1166	0.8944
HKYG	16	-3202.4870	6514.3025	0.0628	0.9572
GTRIG	21	-3186.2658	6516.0252	0.0265	0.9837
HKYI	16	-3203.9763	6517.2811	0.0142	0.9979
HKYIG	17	-3202.4518	6521.0652	0.0021	1.0000
F81G	15	-3227.1497	6556.7948	0.0000	1.0000
F81I	15	-3229.4067	6561.3089	0.0000	1.0000
F81IG	16	-3227.1603	6563.6491	0.0000	1.0000
HKY	15	-3243.9653	6590.4261	0.0000	1.0000
SYMG	17	-3237.2190	6590.5995	0.0000	1.0000
GTR	19	-3231.2198	6592.2672	0.0000	1.0000
SYMI	17	-3239.3061	6594.7738	0.0000	1.0000
K2PG	13	-3253.4203	6595.6699	0.0000	1.0000
SYMIG	18	-3237.1894	6597.3733	0.0000	1.0000
K2PI	13	-3255.1163	6599.0620	0.0000	1.0000
K2PIG	14	-3253.4195	6602.5015	0.0000	1.0000
F81	14	-3268.6121	6632.8867	0.0000	1.0000
JC69G	12	-3277.7897	6637.5758	0.0000	1.0000
JC69I	12	-3279.5875	6641.1714	0.0000	1.0000
JC69IG	13	-3277.7906	6644.4107	0.0000	1.0000
SYM	16	-3279.6484	6668.6252	0.0000	1.0000
K2P	12	-3294.5305	6671.0573	0.0000	1.0000
JC69	11	-3318.9873	6713.1379	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_16026.phylip = 1 - 928;
 Partition Dummy = 1:591-tomodel-phylip/chr4_16026.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_16026.phylip = 1 - 928;
 Partition Dummy = 1:591-tomodel-phylip/chr4_16026.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_16026.phylip = 1 - 928;
 Partition Dummy = 1:591-tomodel-phylip/chr4_16026.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

