
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:45 04/04/2011

Input data from file "591-tomodel-phylip/chr4_15363.phylip" (7 taxa, 1122 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-2987.3380	6006.6759	0.3643	0.3643
HKYI	16	-2987.3892	6006.7784	0.3461	0.7104
HKYIG	17	-2987.1065	6008.2130	0.1689	0.8793
GTRG	20	-2985.3182	6010.6365	0.0503	0.9295
GTRI	20	-2985.3705	6010.7411	0.0477	0.9773
GTRIG	21	-2985.1116	6012.2231	0.0227	1.0000
F81G	15	-3036.6307	6103.2613	0.0000	1.0000
F81I	15	-3036.7790	6103.5580	0.0000	1.0000
F81IG	16	-3036.1502	6104.3004	0.0000	1.0000
SYMIG	18	-3037.0687	6110.1374	0.0000	1.0000
SYMG	17	-3038.6322	6111.2643	0.0000	1.0000
SYMI	17	-3038.8619	6111.7238	0.0000	1.0000
K2PG	13	-3043.7024	6113.4047	0.0000	1.0000
K2PIG	14	-3042.7721	6113.5441	0.0000	1.0000
K2PI	13	-3043.8223	6113.6447	0.0000	1.0000
JC69IG	13	-3083.6838	6193.3676	0.0000	1.0000
JC69G	12	-3084.6860	6193.3719	0.0000	1.0000
JC69I	12	-3084.9268	6193.8536	0.0000	1.0000
HKY	15	-3087.5634	6205.1268	0.0000	1.0000
GTR	19	-3085.8029	6209.6057	0.0000	1.0000
F81	14	-3130.4806	6288.9613	0.0000	1.0000
SYM	16	-3135.5551	6303.1102	0.0000	1.0000
K2P	12	-3140.4995	6304.9991	0.0000	1.0000
JC69	11	-3177.3922	6376.7844	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2987.3380	6087.0418	0.5031	0.5031
HKYI	16	-2987.3892	6087.1443	0.4780	0.9811
HKYIG	17	-2987.1065	6093.6018	0.0189	1.0000
GTRG	20	-2985.3182	6111.0939	0.0000	1.0000
GTRI	20	-2985.3705	6111.1984	0.0000	1.0000
GTRIG	21	-2985.1116	6117.7033	0.0000	1.0000
F81G	15	-3036.6307	6178.6043	0.0000	1.0000
K2PG	13	-3043.7024	6178.7020	0.0000	1.0000
F81I	15	-3036.7790	6178.9010	0.0000	1.0000
K2PI	13	-3043.8223	6178.9420	0.0000	1.0000
K2PIG	14	-3042.7721	6183.8643	0.0000	1.0000
F81IG	16	-3036.1502	6184.6663	0.0000	1.0000
SYMG	17	-3038.6322	6196.6531	0.0000	1.0000
SYMI	17	-3038.8619	6197.1126	0.0000	1.0000
SYMIG	18	-3037.0687	6200.5490	0.0000	1.0000
JC69G	12	-3084.6860	6253.6463	0.0000	1.0000
JC69I	12	-3084.9268	6254.1281	0.0000	1.0000
JC69IG	13	-3083.6838	6258.6648	0.0000	1.0000
HKY	15	-3087.5634	6280.4698	0.0000	1.0000
GTR	19	-3085.8029	6305.0402	0.0000	1.0000
F81	14	-3130.4806	6359.2815	0.0000	1.0000
K2P	12	-3140.4995	6365.2735	0.0000	1.0000
SYM	16	-3135.5551	6383.4761	0.0000	1.0000
JC69	11	-3177.3922	6432.0359	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_15363.phylip = 1 - 1122;
 Partition Dummy = 1:591-tomodel-phylip/chr4_15363.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_15363.phylip = 1 - 1122;
 Partition Dummy = 1:591-tomodel-phylip/chr4_15363.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_15363.phylip = 1 - 1122;
 Partition Dummy = 1:591-tomodel-phylip/chr4_15363.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

