
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:44 04/04/2011

Input data from file "591-tomodel-phylip/chr4_13367.phylip" (7 taxa, 767 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: HKYI


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRI	20	-2382.8472	4806.8205	0.4619	0.4619
GTRG	20	-2383.0670	4807.2600	0.3707	0.8326
GTRIG	21	-2382.8102	4808.8607	0.1665	0.9991
HKYI	16	-2394.2995	4821.3244	0.0003	0.9995
HKYG	16	-2394.4829	4821.6911	0.0003	0.9997
GTR	19	-2391.9455	4822.9083	0.0001	0.9999
HKYIG	17	-2394.2739	4823.3648	0.0001	1.0000
HKY	15	-2404.2230	4839.0851	0.0000	1.0000
SYMG	17	-2430.3967	4895.6105	0.0000	1.0000
SYMI	17	-2430.4443	4895.7057	0.0000	1.0000
K2PG	13	-2435.5462	4897.5758	0.0000	1.0000
K2PI	13	-2435.5679	4897.6191	0.0000	1.0000
SYMIG	18	-2430.3811	4897.6767	0.0000	1.0000
K2PIG	14	-2435.5212	4899.6009	0.0000	1.0000
F81I	15	-2440.8296	4912.2983	0.0000	1.0000
F81G	15	-2441.1354	4912.9099	0.0000	1.0000
F81IG	16	-2440.8359	4914.3971	0.0000	1.0000
SYM	16	-2441.0907	4914.9067	0.0000	1.0000
K2P	12	-2447.1721	4918.7579	0.0000	1.0000
F81	14	-2450.0314	4928.6214	0.0000	1.0000
JC69I	12	-2476.3635	4977.1408	0.0000	1.0000
JC69G	12	-2476.5075	4977.4289	0.0000	1.0000
JC69IG	13	-2476.3579	4979.1992	0.0000	1.0000
JC69	11	-2486.7705	4995.8906	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-2382.8472	4805.6945	0.4574	0.4574
GTRG	20	-2383.0670	4806.1340	0.3672	0.8246
GTRIG	21	-2382.8102	4807.6204	0.1746	0.9993
HKYI	16	-2394.2995	4820.5991	0.0003	0.9995
HKYG	16	-2394.4829	4820.9658	0.0002	0.9998
GTR	19	-2391.9455	4821.8909	0.0001	0.9999
HKYIG	17	-2394.2739	4822.5477	0.0001	1.0000
HKY	15	-2404.2230	4838.4459	0.0000	1.0000
SYMG	17	-2430.3967	4894.7935	0.0000	1.0000
SYMI	17	-2430.4443	4894.8886	0.0000	1.0000
SYMIG	18	-2430.3811	4896.7623	0.0000	1.0000
K2PG	13	-2435.5462	4897.0924	0.0000	1.0000
K2PI	13	-2435.5679	4897.1357	0.0000	1.0000
K2PIG	14	-2435.5212	4899.0424	0.0000	1.0000
F81I	15	-2440.8296	4911.6592	0.0000	1.0000
F81G	15	-2441.1354	4912.2708	0.0000	1.0000
F81IG	16	-2440.8359	4913.6717	0.0000	1.0000
SYM	16	-2441.0907	4914.1814	0.0000	1.0000
K2P	12	-2447.1721	4918.3441	0.0000	1.0000
F81	14	-2450.0314	4928.0629	0.0000	1.0000
JC69I	12	-2476.3635	4976.7270	0.0000	1.0000
JC69G	12	-2476.5075	4977.0151	0.0000	1.0000
JC69IG	13	-2476.3579	4978.7158	0.0000	1.0000
JC69	11	-2486.7705	4995.5409	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-2394.2995	4894.8788	0.4617	0.4617
HKYG	16	-2394.4829	4895.2456	0.3844	0.8461
GTRI	20	-2382.8472	4898.5442	0.0739	0.9200
GTRG	20	-2383.0670	4898.9837	0.0593	0.9793
HKYIG	17	-2394.2739	4901.4700	0.0171	0.9964
GTRIG	21	-2382.8102	4905.1127	0.0028	0.9991
HKY	15	-2404.2230	4908.0832	0.0006	0.9998
GTR	19	-2391.9455	4910.0982	0.0002	1.0000
K2PG	13	-2435.5462	4957.4447	0.0000	1.0000
K2PI	13	-2435.5679	4957.4880	0.0000	1.0000
K2PIG	14	-2435.5212	4964.0372	0.0000	1.0000
SYMG	17	-2430.3967	4973.7157	0.0000	1.0000
SYMI	17	-2430.4443	4973.8109	0.0000	1.0000
K2P	12	-2447.1721	4974.0539	0.0000	1.0000
SYMIG	18	-2430.3811	4980.3270	0.0000	1.0000
F81I	15	-2440.8296	4981.2965	0.0000	1.0000
F81G	15	-2441.1354	4981.9081	0.0000	1.0000
F81IG	16	-2440.8359	4987.9515	0.0000	1.0000
SYM	16	-2441.0907	4988.4612	0.0000	1.0000
F81	14	-2450.0314	4993.0577	0.0000	1.0000
JC69I	12	-2476.3635	5032.4368	0.0000	1.0000
JC69G	12	-2476.5075	5032.7249	0.0000	1.0000
JC69IG	13	-2476.3579	5039.0681	0.0000	1.0000
JC69	11	-2486.7705	5046.6083	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_13367.phylip = 1 - 767;
 Partition Dummy = 1:591-tomodel-phylip/chr4_13367.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_13367.phylip = 1 - 767;
 Partition Dummy = 1:591-tomodel-phylip/chr4_13367.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_13367.phylip = 1 - 767;
 Partition Dummy = 1:591-tomodel-phylip/chr4_13367.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

