
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:44 04/04/2011

Input data from file "591-tomodel-phylip/chr4_13277.phylip" (7 taxa, 886 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-2946.5947	5925.1894	0.4246	0.4246
GTRG	20	-2943.0618	5926.1235	0.2662	0.6908
HKYIG	17	-2946.5845	5927.1691	0.1578	0.8485
GTRIG	21	-2943.0510	5928.1020	0.0990	0.9475
HKYI	16	-2949.1902	5930.3805	0.0317	0.9792
GTRI	20	-2945.6403	5931.2807	0.0202	0.9994
K2PG	13	-2956.7790	5939.5579	0.0003	0.9997
K2PIG	14	-2956.7759	5941.5518	0.0001	0.9998
SYMG	17	-2953.9836	5941.9673	0.0001	0.9999
SYMIG	18	-2954.0000	5944.0000	0.0000	1.0000
K2PI	13	-2959.2725	5944.5450	0.0000	1.0000
SYMI	17	-2956.3664	5946.7328	0.0000	1.0000
HKY	15	-2978.0118	5986.0237	0.0000	1.0000
GTR	19	-2975.3662	5988.7324	0.0000	1.0000
K2P	12	-2987.4145	5998.8290	0.0000	1.0000
SYM	16	-2984.8237	6001.6474	0.0000	1.0000
F81G	15	-3000.6285	6031.2569	0.0000	1.0000
F81IG	16	-3000.6315	6033.2630	0.0000	1.0000
F81I	15	-3002.4694	6034.9389	0.0000	1.0000
JC69G	12	-3009.3987	6042.7974	0.0000	1.0000
JC69IG	13	-3009.4039	6044.8077	0.0000	1.0000
JC69I	12	-3011.0757	6046.1515	0.0000	1.0000
F81	14	-3027.6049	6083.2099	0.0000	1.0000
JC69	11	-3035.9202	6093.8404	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2946.5947	6001.7768	0.4504	0.4504
K2PG	13	-2956.7790	6001.7853	0.4485	0.8989
K2PI	13	-2959.2725	6006.7723	0.0371	0.9360
HKYI	16	-2949.1902	6006.9679	0.0336	0.9696
HKYIG	17	-2946.5845	6008.5432	0.0153	0.9849
K2PIG	14	-2956.7759	6008.5659	0.0151	1.0000
GTRG	20	-2943.0618	6021.8579	0.0000	1.0000
SYMG	17	-2953.9836	6023.3415	0.0000	1.0000
GTRI	20	-2945.6403	6027.0150	0.0000	1.0000
SYMI	17	-2956.3664	6028.1070	0.0000	1.0000
GTRIG	21	-2943.0510	6028.6231	0.0000	1.0000
SYMIG	18	-2954.0000	6030.1609	0.0000	1.0000
K2P	12	-2987.4145	6056.2696	0.0000	1.0000
HKY	15	-2978.0118	6057.8244	0.0000	1.0000
SYM	16	-2984.8237	6078.2349	0.0000	1.0000
GTR	19	-2975.3662	6079.6800	0.0000	1.0000
JC69G	12	-3009.3987	6100.2380	0.0000	1.0000
F81G	15	-3000.6285	6103.0577	0.0000	1.0000
JC69I	12	-3011.0757	6103.5921	0.0000	1.0000
F81I	15	-3002.4694	6106.7396	0.0000	1.0000
JC69IG	13	-3009.4039	6107.0350	0.0000	1.0000
F81IG	16	-3000.6315	6109.8505	0.0000	1.0000
JC69	11	-3035.9202	6146.4942	0.0000	1.0000
F81	14	-3027.6049	6150.2239	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_13277.phylip = 1 - 886;
 Partition Dummy = 1:591-tomodel-phylip/chr4_13277.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_13277.phylip = 1 - 886;
 Partition Dummy = 1:591-tomodel-phylip/chr4_13277.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_13277.phylip = 1 - 886;
 Partition Dummy = 1:591-tomodel-phylip/chr4_13277.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

