
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:42 04/04/2011

Input data from file "591-tomodel-phylip/chr4_10540.phylip" (7 taxa, 929 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-3259.3241	6550.6483	0.5070	0.5070
HKYIG	17	-3259.1541	6552.3082	0.2211	0.7281
HKYI	16	-3260.2660	6552.5320	0.1977	0.9257
GTRG	20	-3257.8970	6555.7940	0.0387	0.9644
GTRI	20	-3258.6665	6557.3329	0.0179	0.9824
GTRIG	21	-3257.7064	6557.4128	0.0172	0.9996
K2PG	13	-3270.3680	6566.7360	0.0002	0.9997
K2PI	13	-3271.0418	6568.0836	0.0001	0.9998
K2PIG	14	-3270.1303	6568.2606	0.0001	0.9999
SYMG	17	-3267.5841	6569.1682	0.0000	0.9999
SYMI	17	-3268.1234	6570.2468	0.0000	1.0000
SYMIG	18	-3267.3434	6570.6869	0.0000	1.0000
HKY	15	-3316.7078	6663.4155	0.0000	1.0000
GTR	19	-3316.0809	6670.1618	0.0000	1.0000
K2P	12	-3330.8290	6685.6579	0.0000	1.0000
SYM	16	-3329.7669	6691.5338	0.0000	1.0000
F81I	15	-3379.0838	6788.1677	0.0000	1.0000
F81G	15	-3379.4109	6788.8219	0.0000	1.0000
F81IG	16	-3378.7844	6789.5687	0.0000	1.0000
JC69I	12	-3392.0301	6808.0601	0.0000	1.0000
JC69G	12	-3392.3241	6808.6481	0.0000	1.0000
JC69IG	13	-3391.7203	6809.4406	0.0000	1.0000
F81	14	-3433.2720	6894.5441	0.0000	1.0000
JC69	11	-3446.9994	6915.9987	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3259.3241	6627.9940	0.4693	0.4693
K2PG	13	-3270.3680	6629.5794	0.2124	0.6817
HKYI	16	-3260.2660	6629.8778	0.1830	0.8646
K2PI	13	-3271.0418	6630.9270	0.1083	0.9729
HKYIG	17	-3259.1541	6634.4881	0.0182	0.9912
K2PIG	14	-3270.1303	6635.9381	0.0088	1.0000
SYMG	17	-3267.5841	6651.3481	0.0000	1.0000
SYMI	17	-3268.1234	6652.4267	0.0000	1.0000
GTRG	20	-3257.8970	6652.4762	0.0000	1.0000
GTRI	20	-3258.6665	6654.0151	0.0000	1.0000
SYMIG	18	-3267.3434	6657.7009	0.0000	1.0000
GTRIG	21	-3257.7064	6658.9291	0.0000	1.0000
HKY	15	-3316.7078	6735.9271	0.0000	1.0000
K2P	12	-3330.8290	6743.6672	0.0000	1.0000
GTR	19	-3316.0809	6762.0099	0.0000	1.0000
SYM	16	-3329.7669	6768.8795	0.0000	1.0000
F81I	15	-3379.0838	6860.6793	0.0000	1.0000
F81G	15	-3379.4109	6861.3335	0.0000	1.0000
JC69I	12	-3392.0301	6866.0694	0.0000	1.0000
JC69G	12	-3392.3241	6866.6574	0.0000	1.0000
F81IG	16	-3378.7844	6866.9145	0.0000	1.0000
JC69IG	13	-3391.7203	6872.2841	0.0000	1.0000
F81	14	-3433.2720	6962.2216	0.0000	1.0000
JC69	11	-3446.9994	6969.1739	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_10540.phylip = 1 - 929;
 Partition Dummy = 1:591-tomodel-phylip/chr4_10540.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_10540.phylip = 1 - 929;
 Partition Dummy = 1:591-tomodel-phylip/chr4_10540.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr4_10540.phylip = 1 - 929;
 Partition Dummy = 1:591-tomodel-phylip/chr4_10540.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

