
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:41 04/04/2011

Input data from file "591-tomodel-phylip/chr3_9700.phylip" (7 taxa, 1277 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-4500.0383	9040.0765	0.7255	0.7255
GTRIG	21	-4500.0382	9042.0765	0.2669	0.9924
GTRI	20	-4504.5934	9049.1867	0.0076	1.0000
HKYG	16	-4526.8959	9085.7918	0.0000	1.0000
HKYIG	17	-4526.9058	9087.8116	0.0000	1.0000
HKYI	16	-4530.2210	9092.4419	0.0000	1.0000
SYMG	17	-4546.6021	9127.2042	0.0000	1.0000
SYMIG	18	-4546.6025	9129.2051	0.0000	1.0000
GTR	19	-4546.1616	9130.3231	0.0000	1.0000
SYMI	17	-4550.3962	9134.7924	0.0000	1.0000
K2PG	13	-4570.1687	9166.3374	0.0000	1.0000
K2PIG	14	-4570.1725	9168.3450	0.0000	1.0000
HKY	15	-4570.0360	9170.0720	0.0000	1.0000
K2PI	13	-4573.1153	9172.2307	0.0000	1.0000
SYM	16	-4590.0234	9212.0469	0.0000	1.0000
K2P	12	-4612.6121	9249.2242	0.0000	1.0000
F81G	15	-4621.1877	9272.3753	0.0000	1.0000
F81IG	16	-4621.2026	9274.4053	0.0000	1.0000
F81I	15	-4624.0871	9278.1742	0.0000	1.0000
JC69G	12	-4654.9441	9333.8881	0.0000	1.0000
JC69IG	13	-4654.9482	9335.8963	0.0000	1.0000
JC69I	12	-4657.7874	9339.5748	0.0000	1.0000
F81	14	-4661.0415	9350.0830	0.0000	1.0000
JC69	11	-4695.0440	9412.0879	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-4500.0383	9143.1219	0.9629	0.9629
GTRIG	21	-4500.0382	9150.2741	0.0269	0.9899
GTRI	20	-4504.5934	9152.2321	0.0101	1.0000
HKYG	16	-4526.8959	9168.2281	0.0000	1.0000
HKYI	16	-4530.2210	9174.8782	0.0000	1.0000
HKYIG	17	-4526.9058	9175.4001	0.0000	1.0000
SYMG	17	-4546.6021	9214.7928	0.0000	1.0000
SYMIG	18	-4546.6025	9221.9459	0.0000	1.0000
SYMI	17	-4550.3962	9222.3810	0.0000	1.0000
GTR	19	-4546.1616	9228.2162	0.0000	1.0000
K2PG	13	-4570.1687	9233.3169	0.0000	1.0000
K2PI	13	-4573.1153	9239.2102	0.0000	1.0000
K2PIG	14	-4570.1725	9240.4768	0.0000	1.0000
HKY	15	-4570.0360	9247.3560	0.0000	1.0000
SYM	16	-4590.0234	9294.4832	0.0000	1.0000
K2P	12	-4612.6121	9311.0514	0.0000	1.0000
F81G	15	-4621.1877	9349.6594	0.0000	1.0000
F81I	15	-4624.0871	9355.4582	0.0000	1.0000
F81IG	16	-4621.2026	9356.8416	0.0000	1.0000
JC69G	12	-4654.9441	9395.7153	0.0000	1.0000
JC69I	12	-4657.7874	9401.4020	0.0000	1.0000
JC69IG	13	-4654.9482	9402.8758	0.0000	1.0000
F81	14	-4661.0415	9422.2147	0.0000	1.0000
JC69	11	-4695.0440	9468.7629	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_9700.phylip = 1 - 1277;
 Partition Dummy = 1:591-tomodel-phylip/chr3_9700.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_9700.phylip = 1 - 1277;
 Partition Dummy = 1:591-tomodel-phylip/chr3_9700.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_9700.phylip = 1 - 1277;
 Partition Dummy = 1:591-tomodel-phylip/chr3_9700.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

