
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:39 04/04/2011

Input data from file "591-tomodel-phylip/chr3_7396.phylip" (7 taxa, 425 characters)

Minimum AIC  model: GTRG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYG	16	-1171.9538	2377.2410	0.2614	0.2614
GTRG	20	-1167.7082	2377.4955	0.2301	0.4915
HKYI	16	-1172.2990	2377.9313	0.1851	0.6766
GTRI	20	-1168.0964	2378.2721	0.1561	0.8327
HKYIG	17	-1171.9509	2379.4054	0.0886	0.9212
GTRIG	21	-1167.6816	2379.6560	0.0781	0.9994
GTR	19	-1175.3997	2390.6760	0.0003	0.9997
HKY	15	-1179.7664	2390.7063	0.0003	1.0000
F81G	15	-1212.9566	2457.0868	0.0000	1.0000
F81I	15	-1213.3052	2457.7841	0.0000	1.0000
F81IG	16	-1212.9453	2459.2239	0.0000	1.0000
K2PG	13	-1217.4264	2461.7385	0.0000	1.0000
K2PI	13	-1217.4853	2461.8563	0.0000	1.0000
K2PIG	14	-1217.4362	2463.8967	0.0000	1.0000
F81	14	-1219.1647	2467.3537	0.0000	1.0000
SYMI	17	-1216.7381	2468.9799	0.0000	1.0000
SYMG	17	-1216.7983	2469.1003	0.0000	1.0000
SYMIG	18	-1216.8100	2471.3047	0.0000	1.0000
K2P	12	-1225.3642	2475.4858	0.0000	1.0000
SYM	16	-1224.5063	2482.3460	0.0000	1.0000
JC69G	12	-1250.2979	2525.3531	0.0000	1.0000
JC69I	12	-1250.6057	2525.9687	0.0000	1.0000
JC69IG	13	-1250.2835	2527.4527	0.0000	1.0000
JC69	11	-1257.0440	2536.7273	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1167.7082	2375.4163	0.2715	0.2715
HKYG	16	-1171.9538	2375.9076	0.2124	0.4839
GTRI	20	-1168.0964	2376.1929	0.1842	0.6681
HKYI	16	-1172.2990	2376.5980	0.1504	0.8185
GTRIG	21	-1167.6816	2377.3632	0.1026	0.9211
HKYIG	17	-1171.9509	2377.9018	0.0784	0.9994
GTR	19	-1175.3997	2388.7994	0.0003	0.9998
HKY	15	-1179.7664	2389.5327	0.0002	1.0000
F81G	15	-1212.9566	2455.9132	0.0000	1.0000
F81I	15	-1213.3052	2456.6105	0.0000	1.0000
F81IG	16	-1212.9453	2457.8906	0.0000	1.0000
K2PG	13	-1217.4264	2460.8528	0.0000	1.0000
K2PI	13	-1217.4853	2460.9706	0.0000	1.0000
K2PIG	14	-1217.4362	2462.8723	0.0000	1.0000
F81	14	-1219.1647	2466.3293	0.0000	1.0000
SYMI	17	-1216.7381	2467.4762	0.0000	1.0000
SYMG	17	-1216.7983	2467.5966	0.0000	1.0000
SYMIG	18	-1216.8100	2469.6200	0.0000	1.0000
K2P	12	-1225.3642	2474.7285	0.0000	1.0000
SYM	16	-1224.5063	2481.0127	0.0000	1.0000
JC69G	12	-1250.2979	2524.5958	0.0000	1.0000
JC69I	12	-1250.6057	2525.2115	0.0000	1.0000
JC69IG	13	-1250.2835	2526.5671	0.0000	1.0000
JC69	11	-1257.0440	2536.0881	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1171.9538	2440.7410	0.5663	0.5663
HKYI	16	-1172.2990	2441.4314	0.4010	0.9673
HKYIG	17	-1171.9509	2446.7873	0.0276	0.9949
HKY	15	-1179.7664	2450.3141	0.0047	0.9996
GTRG	20	-1167.7082	2456.4581	0.0002	0.9998
GTRI	20	-1168.0964	2457.2347	0.0001	1.0000
GTRIG	21	-1167.6816	2462.4571	0.0000	1.0000
GTR	19	-1175.3997	2465.7891	0.0000	1.0000
K2PG	13	-1217.4264	2513.5300	0.0000	1.0000
K2PI	13	-1217.4853	2513.6478	0.0000	1.0000
F81G	15	-1212.9566	2516.6945	0.0000	1.0000
F81I	15	-1213.3052	2517.3918	0.0000	1.0000
K2PIG	14	-1217.4362	2519.6016	0.0000	1.0000
F81IG	16	-1212.9453	2522.7240	0.0000	1.0000
F81	14	-1219.1647	2523.0586	0.0000	1.0000
K2P	12	-1225.3642	2523.3536	0.0000	1.0000
SYMI	17	-1216.7381	2536.3617	0.0000	1.0000
SYMG	17	-1216.7983	2536.4821	0.0000	1.0000
SYMIG	18	-1216.8100	2542.5576	0.0000	1.0000
SYM	16	-1224.5063	2545.8461	0.0000	1.0000
JC69G	12	-1250.2979	2573.2209	0.0000	1.0000
JC69I	12	-1250.6057	2573.8365	0.0000	1.0000
JC69IG	13	-1250.2835	2579.2442	0.0000	1.0000
JC69	11	-1257.0440	2580.6611	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_7396.phylip = 1 - 425;
 Partition Dummy = 1:591-tomodel-phylip/chr3_7396.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_7396.phylip = 1 - 425;
 Partition Dummy = 1:591-tomodel-phylip/chr3_7396.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_7396.phylip = 1 - 425;
 Partition Dummy = 1:591-tomodel-phylip/chr3_7396.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

