
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:39 04/04/2011

Input data from file "591-tomodel-phylip/chr3_7394.phylip" (7 taxa, 475 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1259.4468	2560.7438	0.4415	0.4415
GTRI	20	-1259.7644	2561.3790	0.3213	0.7628
GTRIG	21	-1259.4512	2562.9422	0.1471	0.9099
HKYG	16	-1266.1633	2565.5143	0.0406	0.9506
HKYI	16	-1266.3259	2565.8397	0.0345	0.9851
HKYIG	17	-1266.1803	2567.6998	0.0136	0.9987
SYMG	17	-1269.4520	2574.2432	0.0005	0.9993
SYMI	17	-1269.5262	2574.3915	0.0005	0.9997
SYMIG	18	-1269.4519	2576.4038	0.0002	0.9999
K2PG	13	-1275.7954	2578.3804	0.0001	1.0000
K2PI	13	-1277.1034	2580.9963	0.0000	1.0000
K2PIG	14	-1277.0528	2583.0186	0.0000	1.0000
GTR	19	-1272.4748	2584.6200	0.0000	1.0000
HKY	15	-1278.4408	2587.9274	0.0000	1.0000
SYM	16	-1282.2283	2597.6444	0.0000	1.0000
K2P	12	-1289.6242	2603.9237	0.0000	1.0000
F81G	15	-1311.1730	2653.3917	0.0000	1.0000
F81I	15	-1311.3204	2653.6865	0.0000	1.0000
F81IG	16	-1311.1726	2655.5331	0.0000	1.0000
JC69G	12	-1321.1772	2667.0298	0.0000	1.0000
JC69I	12	-1321.2413	2667.1579	0.0000	1.0000
JC69IG	13	-1321.1896	2669.1687	0.0000	1.0000
F81	14	-1320.9583	2670.8296	0.0000	1.0000
JC69	11	-1330.7023	2683.9747	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1259.4468	2558.8936	0.4459	0.4459
GTRI	20	-1259.7644	2559.5288	0.3246	0.7705
GTRIG	21	-1259.4512	2560.9025	0.1633	0.9338
HKYG	16	-1266.1633	2564.3265	0.0295	0.9633
HKYI	16	-1266.3259	2564.6519	0.0251	0.9884
HKYIG	17	-1266.1803	2566.3607	0.0107	0.9990
SYMG	17	-1269.4520	2572.9040	0.0004	0.9994
SYMI	17	-1269.5262	2573.0523	0.0004	0.9998
SYMIG	18	-1269.4519	2574.9038	0.0001	0.9999
K2PG	13	-1275.7954	2577.5908	0.0000	1.0000
K2PI	13	-1277.1034	2580.2067	0.0000	1.0000
K2PIG	14	-1277.0528	2582.1056	0.0000	1.0000
GTR	19	-1272.4748	2582.9497	0.0000	1.0000
HKY	15	-1278.4408	2586.8816	0.0000	1.0000
SYM	16	-1282.2283	2596.4567	0.0000	1.0000
K2P	12	-1289.6242	2603.2484	0.0000	1.0000
F81G	15	-1311.1730	2652.3460	0.0000	1.0000
F81I	15	-1311.3204	2652.6407	0.0000	1.0000
F81IG	16	-1311.1726	2654.3453	0.0000	1.0000
JC69G	12	-1321.1772	2666.3545	0.0000	1.0000
JC69I	12	-1321.2413	2666.4826	0.0000	1.0000
JC69IG	13	-1321.1896	2668.3791	0.0000	1.0000
F81	14	-1320.9583	2669.9166	0.0000	1.0000
JC69	11	-1330.7023	2683.4045	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1266.1633	2630.9395	0.3602	0.3602
HKYI	16	-1266.3259	2631.2649	0.3061	0.6663
K2PG	13	-1275.7954	2631.7139	0.2446	0.9108
K2PI	13	-1277.1034	2634.3298	0.0661	0.9770
HKYIG	17	-1266.1803	2637.1370	0.0162	0.9932
K2PIG	14	-1277.0528	2640.3920	0.0032	0.9964
GTRG	20	-1259.4468	2642.1599	0.0013	0.9977
GTRI	20	-1259.7644	2642.7951	0.0010	0.9987
SYMG	17	-1269.4520	2643.6804	0.0006	0.9993
SYMI	17	-1269.5262	2643.8287	0.0006	0.9999
GTRIG	21	-1259.4512	2648.3321	0.0001	0.9999
HKY	15	-1278.4408	2649.3313	0.0000	1.0000
SYMIG	18	-1269.4519	2649.8435	0.0000	1.0000
K2P	12	-1289.6242	2653.2082	0.0000	1.0000
GTR	19	-1272.4748	2662.0526	0.0000	1.0000
SYM	16	-1282.2283	2663.0697	0.0000	1.0000
F81G	15	-1311.1730	2714.7957	0.0000	1.0000
F81I	15	-1311.3204	2715.0904	0.0000	1.0000
JC69G	12	-1321.1772	2716.3142	0.0000	1.0000
JC69I	12	-1321.2413	2716.4424	0.0000	1.0000
F81IG	16	-1311.1726	2720.9583	0.0000	1.0000
JC69IG	13	-1321.1896	2722.5022	0.0000	1.0000
F81	14	-1320.9583	2728.2030	0.0000	1.0000
JC69	11	-1330.7023	2729.2010	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_7394.phylip = 1 - 475;
 Partition Dummy = 1:591-tomodel-phylip/chr3_7394.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_7394.phylip = 1 - 475;
 Partition Dummy = 1:591-tomodel-phylip/chr3_7394.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_7394.phylip = 1 - 475;
 Partition Dummy = 1:591-tomodel-phylip/chr3_7394.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

