
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:41 04/04/2011

Input data from file "591-tomodel-phylip/chr3_7251.phylip" (7 taxa, 913 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2941.1953	5922.3905	0.5899	0.5899
GTRIG	21	-2941.1862	5924.3725	0.2190	0.8088
GTRI	20	-2942.3765	5924.7530	0.1810	0.9899
HKYG	16	-2949.7915	5931.5830	0.0060	0.9958
HKYIG	17	-2949.7988	5933.5975	0.0022	0.9980
HKYI	16	-2950.8769	5933.7537	0.0020	1.0000
GTR	19	-2970.0449	5978.0899	0.0000	1.0000
HKY	15	-2977.5655	5985.1310	0.0000	1.0000
K2PG	13	-2989.9599	6005.9199	0.0000	1.0000
K2PI	13	-2990.8799	6007.7598	0.0000	1.0000
K2PIG	14	-2989.9700	6007.9401	0.0000	1.0000
SYMG	17	-2988.2741	6010.5482	0.0000	1.0000
SYMI	17	-2989.1798	6012.3597	0.0000	1.0000
SYMIG	18	-2988.2861	6012.5723	0.0000	1.0000
K2P	12	-3017.9300	6059.8600	0.0000	1.0000
SYM	16	-3016.0731	6064.1461	0.0000	1.0000
F81G	15	-3033.0778	6096.1556	0.0000	1.0000
F81I	15	-3033.0984	6096.1967	0.0000	1.0000
F81IG	16	-3032.9376	6097.8752	0.0000	1.0000
F81	14	-3058.3647	6144.7294	0.0000	1.0000
JC69G	12	-3063.3469	6150.6937	0.0000	1.0000
JC69I	12	-3063.3935	6150.7871	0.0000	1.0000
JC69IG	13	-3063.2188	6152.4377	0.0000	1.0000
JC69	11	-3089.1860	6200.3719	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2949.7915	6008.6508	0.7250	0.7250
HKYI	16	-2950.8769	6010.8215	0.2449	0.9699
HKYIG	17	-2949.7988	6015.4820	0.0238	0.9937
GTRG	20	-2941.1953	6018.7252	0.0047	0.9984
GTRI	20	-2942.3765	6021.0877	0.0014	0.9998
GTRIG	21	-2941.1862	6025.5239	0.0002	1.0000
HKY	15	-2977.5655	6057.3820	0.0000	1.0000
K2PG	13	-2989.9599	6068.5374	0.0000	1.0000
GTR	19	-2970.0449	6069.6079	0.0000	1.0000
K2PI	13	-2990.8799	6070.3774	0.0000	1.0000
K2PIG	14	-2989.9700	6075.3744	0.0000	1.0000
SYMG	17	-2988.2741	6092.4327	0.0000	1.0000
SYMI	17	-2989.1798	6094.2442	0.0000	1.0000
SYMIG	18	-2988.2861	6099.2735	0.0000	1.0000
K2P	12	-3017.9300	6117.6608	0.0000	1.0000
SYM	16	-3016.0731	6141.2139	0.0000	1.0000
F81G	15	-3033.0778	6168.4067	0.0000	1.0000
F81I	15	-3033.0984	6168.4477	0.0000	1.0000
F81IG	16	-3032.9376	6174.9430	0.0000	1.0000
JC69G	12	-3063.3469	6208.4946	0.0000	1.0000
JC69I	12	-3063.3935	6208.5879	0.0000	1.0000
F81	14	-3058.3647	6212.1637	0.0000	1.0000
JC69IG	13	-3063.2188	6215.0552	0.0000	1.0000
JC69	11	-3089.1860	6253.3560	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_7251.phylip = 1 - 913;
 Partition Dummy = 1:591-tomodel-phylip/chr3_7251.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_7251.phylip = 1 - 913;
 Partition Dummy = 1:591-tomodel-phylip/chr3_7251.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_7251.phylip = 1 - 913;
 Partition Dummy = 1:591-tomodel-phylip/chr3_7251.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

