
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:40 04/04/2011

Input data from file "591-tomodel-phylip/chr3_7244.phylip" (7 taxa, 1136 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3398.9631	6837.9262	0.5093	0.5093
GTRI	20	-3399.4697	6838.9393	0.3069	0.8161
GTRIG	21	-3399.0165	6840.0331	0.1776	0.9937
HKYG	16	-3408.0145	6848.0289	0.0033	0.9970
HKYI	16	-3408.5751	6849.1502	0.0019	0.9988
HKYIG	17	-3408.0558	6850.1115	0.0012	1.0000
SYMG	17	-3433.7404	6901.4807	0.0000	1.0000
SYMI	17	-3434.2715	6902.5430	0.0000	1.0000
SYMIG	18	-3433.8196	6903.6391	0.0000	1.0000
K2PG	13	-3444.7702	6915.5404	0.0000	1.0000
K2PI	13	-3445.2912	6916.5823	0.0000	1.0000
K2PIG	14	-3444.8302	6917.6605	0.0000	1.0000
GTR	19	-3459.4196	6956.8393	0.0000	1.0000
HKY	15	-3467.3247	6964.6495	0.0000	1.0000
F81G	15	-3484.7987	6999.5974	0.0000	1.0000
F81I	15	-3485.4111	7000.8221	0.0000	1.0000
F81IG	16	-3486.0810	7004.1619	0.0000	1.0000
SYM	16	-3493.3771	7018.7542	0.0000	1.0000
K2P	12	-3503.3947	7030.7894	0.0000	1.0000
JC69G	12	-3515.8253	7055.6506	0.0000	1.0000
JC69I	12	-3516.3664	7056.7328	0.0000	1.0000
JC69IG	13	-3515.8386	7057.6773	0.0000	1.0000
F81	14	-3539.2456	7106.4912	0.0000	1.0000
JC69	11	-3569.9399	7161.8797	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3408.0145	6928.5932	0.6211	0.6211
HKYI	16	-3408.5751	6929.7145	0.3545	0.9756
HKYIG	17	-3408.0558	6935.7111	0.0177	0.9933
GTRG	20	-3398.9631	6938.6316	0.0041	0.9974
GTRI	20	-3399.4697	6939.6447	0.0025	0.9999
GTRIG	21	-3399.0165	6945.7737	0.0001	1.0000
K2PG	13	-3444.7702	6980.9989	0.0000	1.0000
K2PI	13	-3445.2912	6982.0408	0.0000	1.0000
SYMG	17	-3433.7404	6987.0803	0.0000	1.0000
SYMI	17	-3434.2715	6988.1426	0.0000	1.0000
K2PIG	14	-3444.8302	6988.1542	0.0000	1.0000
SYMIG	18	-3433.8196	6994.2739	0.0000	1.0000
HKY	15	-3467.3247	7040.1785	0.0000	1.0000
GTR	19	-3459.4196	7052.5094	0.0000	1.0000
F81G	15	-3484.7987	7075.1265	0.0000	1.0000
F81I	15	-3485.4111	7076.3512	0.0000	1.0000
F81IG	16	-3486.0810	7084.7262	0.0000	1.0000
K2P	12	-3503.3947	7091.2126	0.0000	1.0000
SYM	16	-3493.3771	7099.3185	0.0000	1.0000
JC69G	12	-3515.8253	7116.0738	0.0000	1.0000
JC69I	12	-3516.3664	7117.1561	0.0000	1.0000
JC69IG	13	-3515.8386	7123.1358	0.0000	1.0000
F81	14	-3539.2456	7176.9849	0.0000	1.0000
JC69	11	-3569.9399	7217.2677	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_7244.phylip = 1 - 1136;
 Partition Dummy = 1:591-tomodel-phylip/chr3_7244.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_7244.phylip = 1 - 1136;
 Partition Dummy = 1:591-tomodel-phylip/chr3_7244.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_7244.phylip = 1 - 1136;
 Partition Dummy = 1:591-tomodel-phylip/chr3_7244.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

