
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:39 04/04/2011

Input data from file "591-tomodel-phylip/chr3_6119.phylip" (7 taxa, 989 characters)

Minimum AIC  model: GTRG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3594.7824	7229.5647	0.3366	0.3366
HKYG	16	-3598.8142	7229.6283	0.3260	0.6626
GTRIG	21	-3594.8004	7231.6008	0.1216	0.7842
HKYIG	17	-3598.8317	7231.6633	0.1179	0.9021
GTRI	20	-3596.6026	7233.2053	0.0545	0.9566
HKYI	16	-3600.8313	7233.6626	0.0434	1.0000
SYMG	17	-3616.4895	7266.9790	0.0000	1.0000
SYMI	17	-3617.3987	7268.7974	0.0000	1.0000
SYMIG	18	-3616.4557	7268.9113	0.0000	1.0000
K2PG	13	-3624.4304	7274.8608	0.0000	1.0000
K2PI	13	-3625.2805	7276.5610	0.0000	1.0000
K2PIG	14	-3624.4199	7276.8398	0.0000	1.0000
HKY	15	-3638.5679	7307.1357	0.0000	1.0000
GTR	19	-3634.9147	7307.8293	0.0000	1.0000
SYM	16	-3654.1123	7340.2246	0.0000	1.0000
K2P	12	-3661.8479	7347.6958	0.0000	1.0000
F81G	15	-3659.3220	7348.6440	0.0000	1.0000
F81I	15	-3659.8067	7349.6133	0.0000	1.0000
F81IG	16	-3659.2027	7350.4054	0.0000	1.0000
JC69G	12	-3682.8295	7389.6590	0.0000	1.0000
JC69I	12	-3682.8482	7389.6963	0.0000	1.0000
JC69IG	13	-3682.5296	7391.0593	0.0000	1.0000
F81	14	-3694.6722	7417.3445	0.0000	1.0000
JC69	11	-3716.8197	7455.6394	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3598.8142	7307.9754	0.8588	0.8588
HKYI	16	-3600.8313	7312.0097	0.1143	0.9731
HKYIG	17	-3598.8317	7314.9071	0.0268	0.9999
GTRG	20	-3594.7824	7327.4986	0.0000	1.0000
GTRI	20	-3596.6026	7331.1391	0.0000	1.0000
GTRIG	21	-3594.8004	7334.4314	0.0000	1.0000
K2PG	13	-3624.4304	7338.5178	0.0000	1.0000
K2PI	13	-3625.2805	7340.2180	0.0000	1.0000
K2PIG	14	-3624.4199	7345.3936	0.0000	1.0000
SYMG	17	-3616.4895	7350.2228	0.0000	1.0000
SYMI	17	-3617.3987	7352.0412	0.0000	1.0000
SYMIG	18	-3616.4557	7357.0518	0.0000	1.0000
HKY	15	-3638.5679	7380.5861	0.0000	1.0000
GTR	19	-3634.9147	7400.8665	0.0000	1.0000
K2P	12	-3661.8479	7406.4562	0.0000	1.0000
SYM	16	-3654.1123	7418.5717	0.0000	1.0000
F81G	15	-3659.3220	7422.0945	0.0000	1.0000
F81I	15	-3659.8067	7423.0638	0.0000	1.0000
F81IG	16	-3659.2027	7428.7525	0.0000	1.0000
JC69G	12	-3682.8295	7448.4193	0.0000	1.0000
JC69I	12	-3682.8482	7448.4567	0.0000	1.0000
JC69IG	13	-3682.5296	7454.7163	0.0000	1.0000
F81	14	-3694.6722	7485.8982	0.0000	1.0000
JC69	11	-3716.8197	7509.5031	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_6119.phylip = 1 - 989;
 Partition Dummy = 1:591-tomodel-phylip/chr3_6119.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_6119.phylip = 1 - 989;
 Partition Dummy = 1:591-tomodel-phylip/chr3_6119.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_6119.phylip = 1 - 989;
 Partition Dummy = 1:591-tomodel-phylip/chr3_6119.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

