
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:37 04/04/2011

Input data from file "591-tomodel-phylip/chr3_5857.phylip" (7 taxa, 1099 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-4087.9896	8215.9792	0.4388	0.4388
GTRIG	21	-4087.8585	8217.7170	0.1841	0.6229
HKYG	16	-4093.0565	8218.1131	0.1510	0.7739
GTRI	20	-4089.2729	8218.5458	0.1216	0.8955
HKYIG	17	-4092.9936	8219.9871	0.0592	0.9546
HKYI	16	-4094.3530	8220.7060	0.0413	0.9959
SYMG	17	-4096.6157	8227.2313	0.0016	0.9975
K2PG	13	-4101.0920	8228.1840	0.0010	0.9985
SYMIG	18	-4096.5801	8229.1602	0.0006	0.9991
K2PIG	14	-4101.0602	8230.1204	0.0004	0.9995
SYMI	17	-4098.2455	8230.4910	0.0003	0.9998
K2PI	13	-4102.6446	8231.2892	0.0002	1.0000
GTR	19	-4123.1602	8284.3204	0.0000	1.0000
HKY	15	-4127.4179	8284.8358	0.0000	1.0000
SYM	16	-4130.1769	8292.3538	0.0000	1.0000
K2P	12	-4134.3216	8292.6432	0.0000	1.0000
F81I	15	-4193.5044	8417.0088	0.0000	1.0000
F81G	15	-4193.7276	8417.4553	0.0000	1.0000
F81IG	16	-4193.1195	8418.2391	0.0000	1.0000
JC69I	12	-4200.6770	8425.3540	0.0000	1.0000
JC69G	12	-4200.8314	8425.6629	0.0000	1.0000
JC69IG	13	-4200.2722	8426.5444	0.0000	1.0000
F81	14	-4223.2167	8474.4334	0.0000	1.0000
JC69	11	-4229.4996	8480.9993	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-4101.0920	8293.2121	0.7388	0.7388
K2PI	13	-4102.6446	8296.3172	0.1564	0.8952
HKYG	16	-4093.0565	8298.1476	0.0626	0.9578
K2PIG	14	-4101.0602	8300.1506	0.0230	0.9808
HKYI	16	-4094.3530	8300.7405	0.0171	0.9979
HKYIG	17	-4092.9936	8305.0238	0.0020	0.9999
SYMG	17	-4096.6157	8312.2680	0.0001	1.0000
SYMI	17	-4098.2455	8315.5276	0.0000	1.0000
GTRG	20	-4087.9896	8316.0223	0.0000	1.0000
GTRI	20	-4089.2729	8318.5889	0.0000	1.0000
SYMIG	18	-4096.5801	8319.1990	0.0000	1.0000
GTRIG	21	-4087.8585	8322.7623	0.0000	1.0000
K2P	12	-4134.3216	8352.6691	0.0000	1.0000
HKY	15	-4127.4179	8359.8682	0.0000	1.0000
SYM	16	-4130.1769	8372.3883	0.0000	1.0000
GTR	19	-4123.1602	8379.3613	0.0000	1.0000
JC69I	12	-4200.6770	8485.3799	0.0000	1.0000
JC69G	12	-4200.8314	8485.6888	0.0000	1.0000
JC69IG	13	-4200.2722	8491.5724	0.0000	1.0000
F81I	15	-4193.5044	8492.0412	0.0000	1.0000
F81G	15	-4193.7276	8492.4876	0.0000	1.0000
F81IG	16	-4193.1195	8498.2736	0.0000	1.0000
JC69	11	-4229.4996	8536.0230	0.0000	1.0000
F81	14	-4223.2167	8544.4635	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_5857.phylip = 1 - 1099;
 Partition Dummy = 1:591-tomodel-phylip/chr3_5857.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_5857.phylip = 1 - 1099;
 Partition Dummy = 1:591-tomodel-phylip/chr3_5857.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_5857.phylip = 1 - 1099;
 Partition Dummy = 1:591-tomodel-phylip/chr3_5857.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

