
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:36 04/04/2011

Input data from file "591-tomodel-phylip/chr3_5848.phylip" (7 taxa, 872 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: HKYI


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-3104.3352	6248.6703	0.5351	0.5351
GTRIG	21	-3104.2550	6250.5100	0.2133	0.7484
HKYI	16	-3109.6347	6251.2695	0.1459	0.8943
HKYIG	17	-3109.6279	6253.2558	0.0540	0.9483
GTRG	20	-3106.8778	6253.7556	0.0421	0.9904
HKYG	16	-3112.3581	6256.7162	0.0096	1.0000
GTR	19	-3155.6725	6349.3450	0.0000	1.0000
HKY	15	-3160.7835	6351.5670	0.0000	1.0000
K2PI	13	-3178.2909	6382.5819	0.0000	1.0000
K2PIG	14	-3178.2584	6384.5168	0.0000	1.0000
K2PG	13	-3180.1352	6386.2704	0.0000	1.0000
SYMI	17	-3176.4176	6386.8352	0.0000	1.0000
SYMIG	18	-3176.3120	6388.6241	0.0000	1.0000
SYMG	17	-3177.8827	6389.7653	0.0000	1.0000
F81I	15	-3196.7636	6423.5271	0.0000	1.0000
F81IG	16	-3196.7662	6425.5324	0.0000	1.0000
F81G	15	-3201.4452	6432.8904	0.0000	1.0000
K2P	12	-3231.8466	6487.6933	0.0000	1.0000
SYM	16	-3230.5771	6493.1543	0.0000	1.0000
F81	14	-3244.3265	6516.6530	0.0000	1.0000
JC69I	12	-3252.0186	6528.0372	0.0000	1.0000
JC69IG	13	-3251.9705	6529.9409	0.0000	1.0000
JC69G	12	-3256.3429	6536.6859	0.0000	1.0000
JC69	11	-3301.4051	6624.8102	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-3109.6347	6327.6021	0.9091	0.9091
HKYG	16	-3112.3581	6333.0488	0.0597	0.9687
HKYIG	17	-3109.6279	6334.3592	0.0310	0.9997
GTRI	20	-3104.3352	6344.0861	0.0002	1.0000
GTRG	20	-3106.8778	6349.1714	0.0000	1.0000
GTRIG	21	-3104.2550	6350.6966	0.0000	1.0000
HKY	15	-3160.7835	6423.1289	0.0000	1.0000
GTR	19	-3155.6725	6439.9900	0.0000	1.0000
K2PI	13	-3178.2909	6444.6021	0.0000	1.0000
K2PG	13	-3180.1352	6448.2907	0.0000	1.0000
K2PIG	14	-3178.2584	6451.3078	0.0000	1.0000
SYMI	17	-3176.4176	6467.9386	0.0000	1.0000
SYMG	17	-3177.8827	6470.8688	0.0000	1.0000
SYMIG	18	-3176.3120	6474.4983	0.0000	1.0000
F81I	15	-3196.7636	6495.0890	0.0000	1.0000
F81IG	16	-3196.7662	6501.8651	0.0000	1.0000
F81G	15	-3201.4452	6504.4522	0.0000	1.0000
K2P	12	-3231.8466	6544.9427	0.0000	1.0000
SYM	16	-3230.5771	6569.4869	0.0000	1.0000
F81	14	-3244.3265	6583.4441	0.0000	1.0000
JC69I	12	-3252.0186	6585.2867	0.0000	1.0000
JC69IG	13	-3251.9705	6591.9612	0.0000	1.0000
JC69G	12	-3256.3429	6593.9353	0.0000	1.0000
JC69	11	-3301.4051	6677.2889	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_5848.phylip = 1 - 872;
 Partition Dummy = 1:591-tomodel-phylip/chr3_5848.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_5848.phylip = 1 - 872;
 Partition Dummy = 1:591-tomodel-phylip/chr3_5848.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_5848.phylip = 1 - 872;
 Partition Dummy = 1:591-tomodel-phylip/chr3_5848.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

