
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:34 04/04/2011

Input data from file "591-tomodel-phylip/chr3_520.phylip" (7 taxa, 803 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2167.5008	4376.0758	0.5195	0.5195
GTRIG	21	-2167.0216	4377.2262	0.2923	0.8118
GTRI	20	-2168.5173	4378.1088	0.1880	0.9998
HKYG	16	-2180.4535	4393.5992	0.0001	0.9999
HKYIG	17	-2179.7996	4394.3789	0.0001	1.0000
HKYI	16	-2181.6155	4395.9231	0.0000	1.0000
SYMG	17	-2181.8741	4398.5279	0.0000	1.0000
SYMIG	18	-2181.3507	4399.5739	0.0000	1.0000
SYMI	17	-2182.9729	4400.7255	0.0000	1.0000
K2PG	13	-2189.6985	4405.8584	0.0000	1.0000
K2PIG	14	-2188.9785	4406.4899	0.0000	1.0000
K2PI	13	-2190.9362	4408.3337	0.0000	1.0000
F81IG	16	-2206.5196	4445.7313	0.0000	1.0000
F81G	15	-2207.7701	4446.1502	0.0000	1.0000
F81I	15	-2208.2022	4447.0143	0.0000	1.0000
GTR	19	-2205.3872	4449.7449	0.0000	1.0000
JC69G	12	-2214.7178	4453.8306	0.0000	1.0000
JC69IG	13	-2214.1133	4454.6879	0.0000	1.0000
JC69I	12	-2215.8812	4456.1573	0.0000	1.0000
HKY	15	-2219.9336	4470.4770	0.0000	1.0000
SYM	16	-2218.9969	4470.6859	0.0000	1.0000
K2P	12	-2228.4218	4481.2385	0.0000	1.0000
F81	14	-2246.1679	4520.8689	0.0000	1.0000
JC69	11	-2252.9773	4528.2884	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2167.5008	4375.0017	0.5112	0.5112
GTRIG	21	-2167.0216	4376.0431	0.3037	0.8149
GTRI	20	-2168.5173	4377.0347	0.1850	0.9999
HKYG	16	-2180.4535	4392.9071	0.0001	0.9999
HKYIG	17	-2179.7996	4393.5993	0.0000	1.0000
HKYI	16	-2181.6155	4395.2310	0.0000	1.0000
SYMG	17	-2181.8741	4397.7483	0.0000	1.0000
SYMIG	18	-2181.3507	4398.7015	0.0000	1.0000
SYMI	17	-2182.9729	4399.9459	0.0000	1.0000
K2PG	13	-2189.6985	4405.3971	0.0000	1.0000
K2PIG	14	-2188.9785	4405.9569	0.0000	1.0000
K2PI	13	-2190.9362	4407.8724	0.0000	1.0000
F81IG	16	-2206.5196	4445.0392	0.0000	1.0000
F81G	15	-2207.7701	4445.5403	0.0000	1.0000
F81I	15	-2208.2022	4446.4044	0.0000	1.0000
GTR	19	-2205.3872	4448.7743	0.0000	1.0000
JC69G	12	-2214.7178	4453.4357	0.0000	1.0000
JC69IG	13	-2214.1133	4454.2265	0.0000	1.0000
JC69I	12	-2215.8812	4455.7623	0.0000	1.0000
HKY	15	-2219.9336	4469.8671	0.0000	1.0000
SYM	16	-2218.9969	4469.9938	0.0000	1.0000
K2P	12	-2228.4218	4480.8435	0.0000	1.0000
F81	14	-2246.1679	4520.3359	0.0000	1.0000
JC69	11	-2252.9773	4527.9546	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-2189.6985	4466.3457	0.4135	0.4135
HKYG	16	-2180.4535	4467.9208	0.1881	0.6016
GTRG	20	-2167.5008	4468.7688	0.1231	0.7247
K2PI	13	-2190.9362	4468.8210	0.1199	0.8446
HKYI	16	-2181.6155	4470.2447	0.0589	0.9035
GTRI	20	-2168.5173	4470.8018	0.0445	0.9480
K2PIG	14	-2188.9785	4471.5939	0.0300	0.9780
HKYIG	17	-2179.7996	4473.3013	0.0128	0.9908
GTRIG	21	-2167.0216	4474.4986	0.0070	0.9978
SYMG	17	-2181.8741	4477.4503	0.0016	0.9994
SYMI	17	-2182.9729	4479.6479	0.0005	0.9999
SYMIG	18	-2181.3507	4483.0919	0.0001	1.0000
JC69G	12	-2214.7178	4509.6959	0.0000	1.0000
JC69I	12	-2215.8812	4512.0226	0.0000	1.0000
JC69IG	13	-2214.1133	4515.1751	0.0000	1.0000
F81G	15	-2207.7701	4515.8656	0.0000	1.0000
F81I	15	-2208.2022	4516.7297	0.0000	1.0000
F81IG	16	-2206.5196	4520.0529	0.0000	1.0000
K2P	12	-2228.4218	4537.1038	0.0000	1.0000
GTR	19	-2205.3872	4537.8531	0.0000	1.0000
HKY	15	-2219.9336	4540.1924	0.0000	1.0000
SYM	16	-2218.9969	4545.0075	0.0000	1.0000
JC69	11	-2252.9773	4579.5265	0.0000	1.0000
F81	14	-2246.1679	4585.9728	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_520.phylip = 1 - 803;
 Partition Dummy = 1:591-tomodel-phylip/chr3_520.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_520.phylip = 1 - 803;
 Partition Dummy = 1:591-tomodel-phylip/chr3_520.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_520.phylip = 1 - 803;
 Partition Dummy = 1:591-tomodel-phylip/chr3_520.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

